- Methodology article
- Open Access
Protoplast isolation, transient transformation of leaf mesophyll protoplasts and improved Agrobacterium-mediated leaf disc infiltration of Phaseolus vulgaris: tools for rapid gene expression analysis
© The Author(s). 2016
- Received: 22 April 2016
- Accepted: 14 June 2016
- Published: 24 June 2016
Phaseolus vulgaris is one of the most extensively studied model legumes in the world. The P. vulgaris genome sequence is available; therefore, the need for an efficient and rapid transformation system is more imperative than ever. The functional characterization of P. vulgaris genes is impeded chiefly due to the non-amenable nature of Phaseolus sp. to stable genetic transformation. Transient transformation systems are convenient and versatile alternatives for rapid gene functional characterization studies. Hence, the present work focuses on standardizing methodologies for protoplast isolation from multiple tissues and transient transformation protocols for rapid gene expression analysis in the recalcitrant grain legume P. vulgaris.
Herein, we provide methodologies for the high-throughput isolation of leaf mesophyll-, flower petal-, hypocotyl-, root- and nodule-derived protoplasts from P. vulgaris. The highly efficient polyethylene glycol-mannitol magnesium (PEG-MMG)-mediated transformation of leaf mesophyll protoplasts was optimized using a GUS reporter gene. We used the P. vulgaris SNF1-related protein kinase 1 (PvSnRK1) gene as proof of concept to demonstrate rapid gene functional analysis. An RT-qPCR analysis of protoplasts that had been transformed with PvSnRK1-RNAi and PvSnRK1-OE vectors showed the significant downregulation and ectopic constitutive expression (overexpression), respectively, of the PvSnRK1 transcript. We also demonstrated an improved transient transformation approach, sonication-assisted Agrobacterium-mediated transformation (SAAT), for the leaf disc infiltration of P. vulgaris. Interestingly, this method resulted in a 90 % transformation efficiency and transformed 60–85 % of the cells in a given area of the leaf surface. The constitutive expression of YFP further confirmed the amenability of the system to gene functional characterization studies.
We present simple and efficient methodologies for protoplast isolation from multiple P. vulgaris tissues. We also provide a high-efficiency and amenable method for leaf mesophyll transformation for rapid gene functional characterization studies. Furthermore, a modified SAAT leaf disc infiltration approach aids in validating genes and their functions. Together, these methods help to rapidly unravel novel gene functions and are promising tools for P. vulgaris research.
- Agrobacterium infiltration
- Gene expression
- Phaseolus vulgaris
- Transient transformation
The common bean, Phaseolus vulgaris, is an economically important crop that belongs to the family Leguminosae and is the most essential grain legume for direct human consumption in the world; in Latin America alone, this species holds a stake of more than 70 % . Despite having such enormous agroeconomic relevance, this crop suffers from several widespread major diseases and abiotic stresses, which decrease the crop yield [2, 3]. Attempts at transformation and crop improvement programs have been hampered by this species’ notorious recalcitrance to routine in vitro regeneration and transformation . Furthermore, unlike other legumes, P. vulgaris has serious limitations, such as an unavailability of mutants and a lack of rapid and efficient tools for transformation, preventing this species from being used as a versatile model for legume-related research. The P. vulgaris genome sequence is available ; therefore, the need for an efficient and rapid transformation system is more imperative than ever. Although some reports have suggested the feasibility of the stable transformation of common bean using a microprojectile bombardment method , this option demands vast resources and intensive work with a miniscule yield compared to the bombardment methods of other model crop plants, including cereals . Such a low efficiency makes this method potentially unusable in small-scale laboratories. As an alternative, the hairy root system is the only adoptable technique available to carry out transient gene functional analysis . Nevertheless, this method is a transformation procedure that demands time and it is not eligible for a high-throughput analysis of heterologous gene expression.
Compared to the stable transgenic approach, the use of transient gene expression assays offers an opportunity to rapidly assess the function of a large number of genes by evaluating the transcriptional activity of promoters and the sub-cellular localization of proteins and to investigate cell biology and physiology, cell wall traits, etc. In plant biology research, protoplast transfection is well established and used efficiently in single-cell-based studies. Plant protoplasts have shown reactions similar to those of intact cells to hormones, metabolites, environmental cues and pathogen-derived elicitors, providing a powerful and versatile cell system for the high-throughput dissection of plant signal transduction pathways in many plant species, such as Arabidopsis [9–11], maize and rice , Brassica , sunflower , Populus , Poinsettia  and palm . On the other hand, the available protocols for P. vulgaris protoplast isolation from either cell suspension cultures  or cotyledonary leaves  are not amenable to transfection .
In addition, the Agrobacterium-mediated leaf disc infiltration method is another transient system that is routinely exploited in functional analyses of genes. Sonication-assisted Agrobacterium-mediated transformation (SAAT) involves subjecting plant tissue to a brief period of ultrasound in the presence of Agrobacterium. Unlike other transformation methods, this system has the potential to transform several cell layers and, furthermore, is an easy and reliable approach to carry out gene functional characterization studies [10, 21, 22]. The protocol is potentially suitable for a wide variety of molecular studies, including gene regulation, protein localization, tagged protein expression, chromatin immunoprecipitation, protein-protein interactions, bimolecular fluorescence complementation (BiFC), protein stability, etc. The simplicity of the protocol allows it to be used in other crop plants as well.
The present paper describes novel protocols for protoplast isolation from different P. vulgaris tissues, such as leaf mesophyll, flower petal, hypocotyl, root and nodule, that could be further used to perform rapid cell biology, physiology, and biochemical assays, among others. This study also presents a highly efficient polyethylene glycol-mannitol magnesium (PEG-MMG)-mediated transformation protocol for P. vulgaris leaf mesophyll-derived protoplasts. To validate this method for gene expression studies, we used the P. vulgaris SNF1-related protein kinase 1 (PvSnRK1) gene . SnRK genes are evolutionarily conserved metabolic sensors that undergo activation in response to decreased energy levels in eukaryotes. Plant SnRK1 is well characterized and shown to regulate the timing of embryo maturation in Arabidopsis, sucrose cleavage in potato [24, 25], and pollen development (due to the failure to incorporate sucrose into starch) in barley . SnRK1 also interacts with ABA-dependent and ABA-independent pathways in legumes . The non-conserved cDNA region and open reading frame (ORF) of P. vulgaris SnRK1 were cloned individually in RNAi and constitutive expression (overexpression) vectors and transfected into mesophyll-derived protoplasts for the downregulation and overexpression of PvSnRK1 transcript, respectively. Furthermore, the concept of transient gene expression is met by providing a modified gene transformation approach, the SAAT, for the leaf disc infiltration of P. vulgaris. A β-glucuronidase (GUS)-based assay and the constitutive expression of yellow fluorescent protein (YFP) demonstrate the efficiency of Agrobacterium infiltration, T-DNA integration and expression.
Optimization of protoplast isolation
Selection of suitable tissues for protoplast isolation and Agrobacterium leaf disc infiltration
Isolation of protoplasts
Conditions for protoplast isolation from various Phaseolus vulgaris tissues
Enzyme solution (ES)
1.50 % (w/v) cellulase R10, 0.37 % (w/v) macerozyme R10
3 × 105
cells g-1ml-1 FW
1.50 % (w/v) cellulase R10, 0.37 % (w/v) macerozyme R10, 30 U pectinase
2 × 105
cells g-1ml-1 FW
Hypocotyl & root
2.0 % (w/v) cellulase R10, 0.3 % (w/v) macerozyme R10, 4.0 % (w/v) hemicellulase
2 × 105
cells g-1ml-1 FW
1.0 % (w/v) cellulase R10, 0.3 % (w/v) macerozyme R10, 1.0 % (w/v) hemicellulase, 30 U of pectinase
1 × 105
cells g-1ml-1 FW
To digest the hypocotyl, root and nodule tissues, the tissues were first sliced and plasmolysed sequentially in 9 % and 13 % mannitol in CPW (Cell and protoplast washing solution) solution for 2 h each. Then, the plasmolysed hypocotyl and root tissues were treated with ES-III and the nodules tissues with ES-IV (Table 1) for a period of 16–18 h. Interestingly, the mechanical squeezing of the digesting tissues using sterile forceps further increased the protoplast yield. Nevertheless, the prolonged incubation of the samples did not affect the protoplast quality. These protocols were versatile and successful in obtaining high protoplast yields of 2 × 105 cells g-1ml-1 FW from hypocotyls (Fig. 2c), roots, and nodules (Fig. 2e-g) and 1 × 105 cells g-1ml-1FW from the root tips (Fig. 2d).
A great variation in protoplast size was observed depending on the source. Hypocotyl-derived protoplasts were the largest (70 to 130 μm), and nodule-uninfected cell-derived protoplasts were the smallest (2 to 4 μm) (Fig. 2e & c). The protoplasts mostly remained spherical, except in case of nodule-infected cells, which were heterogeneously shaped.
Optimization of the transient transformation of leaf mesophyll-derived protoplasts
PEG-mediated transformation was performed using two different buffers: 1) PEG-calcium transfection solution: 10–40 % PEG 4000 in distilled water containing 0.2 M mannitol and 100 mM CaCl2  and 2) PEG-MMG transfection solution: 10–40 % PEG 4000 in MMG solution . The efficiency was the highest in PEG-mediated transformation in solution with 40 % PEG 4000 (Fig. 3a-b), where 93.4 ± 1.8 % of the protoplasts were transformed by the PEG-MMG method; only 65.8 ± 3.8 % of the protoplasts were transformed in PEG-calcium transfection solution (Fig. 3a & Additional file 4). The concentration of plasmid DNA was the next important factor that influenced the transformation frequency . Utilizing the PEG-MMG transformation approach herein, we analyzed different plasmid DNA quantities to determine the optimal quantity yielding the highest percent transformation. As shown in Fig. 3b, 72 ± 2.1 % transformation was observed using low plasmid DNA quantities, such as 5 and 10 μg. Similarly, high plasmid DNA quantities, i.e., 30 and 40 μg, also resulted in a range of 87 ± 3.1 % transformation. However, 15–20 μg of plasmid DNA was suitable for achieving 92.5 ± 2 % transfection in all of the analyzed constructs (Fig. 3b).
Gene functional analysis
Transient transformation of P. vulgaris leaf disc by an improved SAAT method
Transfection efficiency of Phaseolus vulgaris leaf discs that were infiltrated by the SAAT method under different infiltration media
The common bean, Phaseolus vulgaris, is a model legume that has been extensively studied worldwide. Given the absence of a reliable protocol for P. vulgaris regeneration, the development of an optimal in vitro culture system remains a major challenge because this and other species from the Phaseolus genus are recalcitrant for in vitro regeneration . Thus, the application of biotechnological tools for crop improvement and gene functional characterization in P. vulgaris are major limiting factors in plant research. Alternatively, transient expression assays have been indispensable for rapid progress in functional genomics research in other model plants. For instance, the Arabidopsis mesophyll protoplast transient expression system is an efficient and useful system for characterizing genes and their functions. However, the use of such a mesophyll protoplast transient system for the model legume P. vulgaris is still in its infancy. The optimal plant growth conditions that are associated with highly efficient protoplast isolation, including the optimal enzyme concentration, the length of digestion, the protoplast yield, the percent transfection efficiency, and the use of the system for characterizing exogenously introduced gene(s), have not been previously reported.
The uniqueness of the current study is demonstrated in the procedures that were used to isolate good-quality protoplasts from Phaseolus leaves, flower petals, hypocotyls, roots and nodules. The recalcitrant nature of Phaseolus often makes it difficult to use in vitro suspension cultures. The techniques described here use pot-grown or germinated seedlings as opposed to cells from in vitro cultures . Further, there is also an increased possibility that these protoplasts maintain their in planta physiology and responses to signal transduction. The key to the successful isolation of protoplasts from various tissues was the plant growth environment because some changes in environmental conditions such as, flooding, extreme temperature, drought and mechanical perturbation will decrease the yield and will also affect the transfection efficiency [10, 34]. The time that was needed for digestion varied depending on the tissue source, and this variation could be due to the changing cell wall composition across tissues. While isolating hypocotyls and nodule protoplasts, the preplasmolysis and osmolarity of the enzyme solution had a significant effect on the protoplast yield [35, 36]. Generally, protoplasts burst in hypotonic solution and collapse in hypertonic solution [37, 38] and in the present study, 9–13 % mannitol imposed appropriate osmotic pressure. The yield and viability of protoplasts are comparable to those of previous reports [39–41].
Thus, isolated protoplasts varied greatly in size and form depending on the tissue source. The protoplasts mostly remained spherical, except in the case of nodule-infected cells, which were heterogeneously shaped, in agreement with previous descriptions of infected protoplasts from determinate nodules [40, 42, 43].
Among the different methods for transfecting leaf mesophyll-derived protoplasts, the PEG-MMG method using 15–20 μg of plasmid DNA (pPZP-RCS-35S/intron GUS) and 40 % PEG was optimal, with 90–95 % transformed cells. This study demonstrates that Phaseolus protoplasts could be the system of choice when analyzing gene function either by RNAi or by overexpression. Because protoplasts are non-growing cells, effective RNAi-triggered gene silencing depends not only on the depletion of gene transcripts but also on the turnover rates of corresponding polypeptides. Herein, we tested whether transient RNAi in protoplasts results in the depletion of a targeted polypeptide using the PvSnRK1-RNAi vector and also tested the feasibility of the ectopic, constitutive expression of PvSnRK1 in leaf mesophyll-derived protoplasts. The quantitative RT-PCR results showed that the protoplasts that were transformed with the PvSnRK1-RNAi and PvSnRK1-OE vectors significantly downregulated and ectopically overexpressed the PvSnRK1 transcript, respectively. The transfection of RNAi vectors in Arabidopsis and rice protoplasts decreases the transcript level of the targeted exogenous and endogenous genes [44, 45].
With the goal of standardizing the methodology for the transient transformation of P. vulgaris leaf disc infiltration by SAAT, several aspects were optimized: 1) the density of bacteria required to obtain efficient tissue transformation [30, 46], 2) Winan’s AB medium effectiveness among the different infiltration media , 3) the Silwet concentration, and 4) unlike the previous reports, the use of 5 μM acetosyringone in an overnight bacterial culture in Winan’s AB medium and the further addition of 100 μM to the infiltration medium, ensuring highly efficient transformation resulting in approximately 60–85 % of the leaf disc being transformed cells. Furthermore, we validated the system for the constitutive expression of the YFP gene and showed an intense fluorescent protein in the leaf epidermal cells. Thus, these results demonstrate that the modified SAAT leaf disc infiltration method is a simple, highly efficient and rapid process that is suitable for gene expression analysis.
In this study, we present protocols for the isolation of protoplasts from 5 different tissues of the model legume P. vulgaris. We also provide a high-efficiency and amenable method for leaf mesophyll transformation for gene functional characterization studies. Furthermore, we developed a modified SAAT leaf disc infiltration approach that aids in rapidly validating genes and their functions. These methods may help to rapidly unravel the functions of novel genes and represent promising tools for P. vulgaris research.
Plant material and growth conditions
In the present study, Phaseolus vulgaris L. cv Negro Jamapa was the source of all of the tissue material. The seeds were surface sterilized , and 2-day-old seedlings were grown either in sterile vermiculite or on sterile filter paper moistened with Broughton and Dilworth  (B&D) nutrient solution in Petri dishes (10 cm diameter) in a growth chamber at 26–28 °C, 65 % humidity. The seedlings were irrigated on alternate days with B&D nutrient solution.
Developing constructs for protoplast transformation
To develop an overexpression construct of PvSnRK1, the ORF of PvSnRK1 (Phvul.008G039400.1) from P. vulgaris cDNA was isolated, and the 1548 bp ORF fragment was inserted into the pH7WG2D.1 binary vector under the control of the constitutive 35S promoter  using the Gateway System (Fig. 7c). The correct orientations of the clones were confirmed by sequencing the plasmid insert.
Leaf mesophyll and flower petal protoplast isolation
Hypocotyl and root protoplast isolation
Protoplasts were isolated using the hypocotyl and root tip tissues (Fig. 1c-d) of three-day-old seedlings that were germinated on moistened filter paper. One gram of tissue was used to make 1-mm-thick fragments, which were plasmolysed sequentially in 9 % and 13 % mannitol in CPW solution [(KH2PO4 (27.2 mg l-1), KNO3 (100 mg l-1), CaCl2 (150 mg l-1), MgSO4 (250 mg l-1), Fe2(SO4)3.6H2O (2.5 mg-1l), KI (0.16 mg l-1) and CuSO4 (0.00025 mg l-1) pH 5.8] for 2 h each. The plasmolysed tissue was transferred to ES-III [2 % (w/v) cellulase R10, 0.3 % (w/v) macerozyme R10, and 4 % (w/v) hemicellulase in CPW with 13 % mannitol] and incubated overnight in the dark on a horizontal shaker (40 rpm) at 30 °C. The following day, the tissues were gently squeezed using sterile forceps to facilitate the release of protoplasts. To the solution of protoplasts, an equal volume of W5 solution was added, and the mixture was passed through 108 μm mesh to remove the debris. At this stage, the cells were washed in W5 solution similar to the leaf mesophyll protoplasts and finally re-suspended in MMG solution at the desired hypocotyl (Fig. 2c) and root (Fig. 2d) protoplast density.
Protoplast isolation from nodules
Mature nodules that were harvested from P. vulgaris roots 18–21 days after inoculation with Rhizobium tropici expressing the GFP reporter were used for protoplast isolation (Fig. 1e; Additional file 1D). Approximately 500 mg of fresh and healthy nodules (Fig. 1e) was excised from the roots and cut into 0.5–1 mm slices using a sterile razor (Additional file 1D). The nodule slices were plasmolysed in CPW with mannitol (Fig. 8c), similar to the hypocotyl and root tissues. The plasmolysed tissue was transferred to ES-IV [10 mM MES, 0.6 M mannitol, and 1 mM MgCl2, with the addition of 1 % (w/v) cellulase R10, 0.3 % (w/v) macerozyme R10, 1 % (w/v) hemicellulase and 30 U of pectinase at pH 5.7] and incubated overnight in the dark on a horizontal shaker (40 rpm) at 30 °C. Later, an equal volume of W5 solution was added to the digested tissue and passed through 108 μm mesh. Uninfected (Fig. 2e) and infected (Fig. 2f-g) cells were further separated by passing the filtrate through 20 μm mesh. At this point, the cells were washed twice in W5 solution by centrifugation at 100 × g for 3 min each. Finally, the infected and uninfected cells were re-suspended in MMG solution at the desired cell density.
Leaf mesophyll protoplast transformation
The pPZP-RCS::GUS  binary vector (Fig. 7d) was used to optimize the transformation conditions for P. vulgaris leaf mesophyll protoplast studies. The transformation steps were carried out either in a glass Petri plate or glass tube to avoid any loss due to protoplast adhesion. To introduce the plasmid DNA into protoplasts three different approaches such as electroporation, heat shock and PEG mediated transformation were used. Transformation by electroporation (28, 29) was carried out by varying the electrolytes (KCl, CaCl2, MgCl2), electric field (250 or 300 V cm-1) and different capacitance (10, 33 or 50 μF) 2–3 pulses for different durations ranging from 10 s to 15 s with an interval of 20 s. In the heat shock method the protoplasts in CPW13 solution were combined with the plasmid DNA and the solution was exposed to 45 °C for 4–8 min followed by cooling on ice for 10 min.
PEG mediated transformation was carried out employing the same protocol with PEG-CaCl2 transfection buffer or PEG-MMG transfection buffers. For PEG mediated transformation, 200 μl (~2 × 105) of protoplasts was pipetted into the center of the Petri plate, 10 μl (10–20 μg) of plasmid DNA (pPZP-RCS-35S-intron GUS) was added, and the plate swirled gently to mix. After incubating at room temperature for 5 min, 200 μl of PEG (40 % PEG 4000 prepared in MMG solution) was added and mixed gently, and the transfection mixture was incubated at room temperature for 15–20 min. The transfection mixture was diluted by adding 2 ml of 0.45 M mannitol at 2 min intervals until the total volume reached to 12 ml. The mixture was mixed carefully after every addition of mannitol. The transfection mixture was transferred to a suitable round bottom glass tube, and the protoplasts were pelleted at 100 g for 3 min. The cells were re-suspended in 1 ml of WI solution [4 mM MES containing 0.5 M mannitol and 20 mM KCl at pH 5.7], transferred to 6- or 12-well tissue culture plates and incubated for 3–6 h under light at room temperature. To stain the transformed protoplast for GUS histochemical activity, the protoplasts were resuspended in GUS reaction buffer and incubated in the dark at 37 °C for 16–24 h according to Jefferson . The GUS-stained cells were mounted with 40 % glycerol in PBS (137 mM NaCl, 2.7 mM KCl, 4.3 mM Na2HPO4, and 1.47 mM KH2PO4) and observed under a microscope to assess the percent transformation. Gene functional analyses, such as the downregulation and overexpression of PvSnRK1, were carried out using PvSnRK1-RNAi and PvSnRK1-OE binary vectors, respectively.
The total RNA was isolated from frozen leaf mesophyll-derived protoplasts using the RNeasy Plant Mini Kit according to the manufacturer’s recommendations (Qiagen, USA). Genomic DNA contamination in RNA samples was eliminated by incubating the samples with RNase-free DNase (1 U μl– 1) at 37 °C for 15 min and then at 65 °C for 10 min. The RNA integrity and concentration were determined by electrophoresis and a Nanodrop ND-2000 spectrophotometer (Thermo Scientifics), respectively. For qRT-PCR, 2 μg of total RNA was used to synthesize cDNA.
Quantitative real-time PCR was performed using the iScriptTM One-step RT-PCR Kit with SYBR® Green, following the manufacturer’s instructions, in an iQ5 Multicolor Real-time PCR Detection System (Bio-Rad). Each reaction was set up using 40 ng of RNA as the template. A control sample that lacked reverse transcriptase (RT) was included to confirm the absence of contaminant DNA. The relative gene expression levels were calculated using the 2-∆CT method, with ∆CT = CTgene – CTreference gene. P. vulgaris EF1α and IDE were used as internal controls, as previously described [53, 54]. The relative expression values, normalized with two reference genes, were calculated as previously described . The data are averages of two or three biological replicates, and each sample was assessed in triplicate. The expression of the genes that are listed in Additional file 5 was quantified using gene-specific oligonucleotides.
Agrobacterium-mediated leaf disc infiltration with sonication
Agrobacterium tumefaciens strain AGL1 carrying the binary vector pPZP-RCS::GUS or pEarleyGate104 (Fig. 7e) was used for the P. vulgaris leaf disc infiltration experiments. Different infiltration media, such as (i) 10 mM MgCl2 , (ii) 10 mM MgCl2 and 5 mM MES-KOH (pH 5.6)  and (iii) Winan’s AB medium (pH 5.6)  were used to test the SAAT method for P. vulgaris leaf disc transformation.
The Agrobacteria were grown on LB agar plates with the appropriate antibiotics for 16–18 h, after which a single colony from the plate was used to inoculate LB broth and further grown for 18 h at 28 °C. An aliquot of 3 ml from the overnight culture was used to inoculate 100 ml of freshly prepared infiltration media, including 10 mM MgCl2, 10 mM MgCl2 and 5 mM MES-KOH, or Winan’s AB minimal medium amended with the appropriate antibiotics and 5 μM acetosyringone. The culture was further grown for 18 h on incubator shaker (230 rpm) at 28 °C. The OD600 was adjusted to 0.5–0.7 with the appropriate media, and SAAT was performed. In the case of Winan’s AB medium, the bacterial culture was divided into two halves, and 10 μl liter-1 Silwet L-77 (surfactant; Vac-In-Stuff, Lehle Seeds, USA) and 100 μM acetosyringone were added (each to only one half of the culture). Bean leaf discs (6–11 mm) were immersed in one half of the bacterial culture, sonicated for 5 min and later transferred to the second half of the culture, followed by vacuum infiltration. Vacuum infiltration was carried out for 20–25 min with 2–3 abrupt breaks. Finally, the leaf discs were incubated in the same bacterial culture in the dark for 30 min at 28 °C on a horizontal shaker (40 rpm). Following incubation, the leaf discs were washed 3–4 times in PBS and incubated for 24 h on moistened sterile filter paper towels at 28 °C. Finally, the leaf discs were washed with PBS containing 250 μg ml-1 cefotaxime to remove the Agrobacterium and were incubated for another 24 h on wet paper towels at 28 °C before further analysis.
GUS histochemical assay and microscopy
A GUS assay was performed according to Jefferson  by incubating the leaf mesophyll-derived protoplasts or Agrobacterium-infiltrated leaf discs in the dark at 37 °C for 16–24 h. The β-glucuronidase activity was observed with a brightfield Zeiss Axioplan microscope equipped with DIC optics. Transformed leaf protoplasts expressing TdT (red) and GFP (green) fluorescence were mounted onto slides in 40 % glycerol in PBS (pH 7.4) and observed on a ZEISS-LSM/510 confocal laser-scanning microscope. GFP and YFP fluorescence was excited with a blue argon ion laser (488 nm), and the emitted fluorescence was collected from 510 to 540 nm. RFP fluorescence was excited at 561 nm by a solid-state laser, and emission was filtered using a band-pass filter of 640/50 nm.
Dpi, Days post inoculation; ES, Enzyme solution; GFP, Green fluorescent protein; GUS, β-glucuronidase; RFP, Red fluorescent protein; SAAT, Sonication-assisted Agrobacterium-mediated transformation; SnRK1, SNF1-related protein kinase 1; TdT, tandem dimer Tomato/tomato double tandem
We thank Dr. Rosana Sánchez-López (IBT-UNAM) for critically reading the manuscript. The authors gratefully acknowledge the partial support of this work by PAPIIT (Dirección General de Asuntos del Personal Académico-UNAM) IN219916 to ML and IA205115 to MKA. This work was also supported by the Consejo Nacional de Ciencia y Tecnología, CONACYT-240614 to ML. We are grateful to the Centro de Ciencias Genómicas, UNAM, for providing the research facilities. We thank Xochitl Alvarado Affantrange (IBT-UNAM) and Victor Manuel Bustos Zagal (CCG, UNAM) for assistance with confocal microscopy and in the greenhouse, respectively.
This work was supported by Dirección General de Asuntos del Personal Académico (DGAPA-UNAM) for partially funding this research (Grant no. IN219916 to ML and Grant no. IA205115 to MKA) and Consejo nacional de ciencia y tecnològia (CONACYT) (Grant no. 240614 to ML).
Availability of data and material
All the data obtained in this study are presented in the main body of this article and there are no supporting data available outside the main body of this article.
NK designed the project, conducted the experiments and analyzed the data. NK also wrote the preliminary manuscript. MKA was involved in technical support, microscopy, documentation and RT-qPCR analysis. LB isolated and cloned the PvSnRK1 gene into the RNAi binary vector. ESA assisted in the optimization of protoplast isolation. ML (corresponding author) conceived and coordinated the study, critically evaluated the data, and finalized the manuscript. All of the authors read and approved the final manuscript.
The authors declare that they have no competing interests.
Consent to publication
Ethics approval and consent to participate
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- Broughton WJ, Hernández G, Blair M, Beebe S, Gepts P, Vanderleyden J. Beans (Phaseolus spp.) - model food legumes. Plant Soil. 2003;252:55–128.View ArticleGoogle Scholar
- Beaver JS, Osorno JM. Achievements and limitations of contemporary common bean breeding using conventional and molecular approaches. Euphytica. 2009;168:145–75.View ArticleGoogle Scholar
- Popelka JC, Terryn N, Higgins TJV. Gene technology for grain legumes: can it contribute to the food challenge in developing countries? Plant Sci. 2004;167:195–206.View ArticleGoogle Scholar
- Hnatuszko-Konka K, Kowalczyk T, Gerszberg A, Wiktorek-Smagur A, Kononowicz AK. Phaseolus vulgaris - recalcitrant potential. Biotechnol Adv. 2014;32:1205–15.View ArticleGoogle Scholar
- Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nat Genet. 2014;46:707–13.View ArticleGoogle Scholar
- Rech EL, Vianna GR, Aragão FJL. High-efficiency transformation by biolistics of soybean, common bean and cotton transgenic plants. Nat Protoc. 2008;3:410–18.View ArticleGoogle Scholar
- Sticklen MB, Oraby HF. Invited review: shoot apical meristem: a sustainable explant for genetic transformation of cereal crops. In Vitro Cell Dev Biol. 2005;41:187–200.View ArticleGoogle Scholar
- Estrada-Navarrete G, Alvarado-Affantranger X, Olivares J, Guillén G, Díaz-Camino C, Campos F, Quinto C, Gresshoff PM, Sanchez F. Fast, efficient and reproducible genetic transformation of Phaseolus spp. by Agrobacterium rhizogenes. Nat Protoc. 2007;2:1819–24.View ArticleGoogle Scholar
- Sheen J. Signal transduction in maize and Arabidopsis mesophyll protoplasts. Plant Physiol. 2001;127:1466–75.View ArticleGoogle Scholar
- Yoo SD, Cho YH, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc. 2007;2:1565–72.View ArticleGoogle Scholar
- Zhai Z, Sooksa-nguan T, Vatamaniuk OK. Establishing RNA Interference as a Reverse-Genetic approach for Gene Functional Analysis in Protoplasts. Plant Physiol. 2009;149:642–52.View ArticleGoogle Scholar
- Nishimura A, Aichi I, Matsuoka M. A protocol for Agrobacterium-mediated transformation in rice. Nat Protoc. 2006;1:2796–802.View ArticleGoogle Scholar
- Bhalla PL, Singh MB. Agrobacterium-mediated transformation of Brassica napus and Brassica oleracea. Nature Proto. 2008;3:181-9.Google Scholar
- Manavella PA, Chan RL. Transient transformation of sunflower leaf discs via an Agrobacterium-mediated method: applications for gene expression and silencing studies. Nature proto. 2009;4:1699-707.Google Scholar
- Guo J, Morrell-Falvey JL, Labbe’ JL, Muchero W, Kalluri UC, Tuskan GA, Jin-Gui C. Highly efficient isolation of Populus mesophyll protoplasts and its application in transient expression assays. Plos One. 2012;7:1–8.View ArticleGoogle Scholar
- Pitzschke A, Persak H. Poinsettia protoplasts - a simple, robust and efficient system for transient gene expression studies. Plant Methods. 2012;8:14.View ArticleGoogle Scholar
- Masani MYA, Noll GA, Parveez GKA, Sambanthamurthi R, Prüfer D. Efficient transformation of oil palm protoplasts by PEG-mediated transfection and DNA microinjection. Plos One. 2014;9:e96831.View ArticleGoogle Scholar
- Giovenazzo G, Greco V, Vitale A, Bollini R. Bean (Phaseolus vulgaris L.) protoplasts as model system to study the expression and stability of recombinant seed proteins. Plant Cell Rep. 1997;16:705–09.View ArticleGoogle Scholar
- Crepy L, Barros LMG, Valente VRN. Callus production from leaf protoplasts of various cultivars of bean (Phaseolus vulgaris L.). Plant Cell Rep. 1986;5:124–26.View ArticleGoogle Scholar
- Veltcheva M, Svetleva D, Petkova S, Perl A. In vitro regeneration and genetic transformation of common bean (Phaseolus vulgaris L.) problems and progress. Sci Horticult. 2005;107:2–10.View ArticleGoogle Scholar
- Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16:735–43.View ArticleGoogle Scholar
- Yang Y, Li R, Qi M. In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves. Plant J. 2000;22:543–51.View ArticleGoogle Scholar
- Smith AM, Stitt M. Coordination of carbon supply and plant growth. Plant Cell Environ. 2007;30:1126–49.View ArticleGoogle Scholar
- Purcell PC, Smith AM, Halford MG. Antisense expression of a sucrose non-fermenting 1 related protein kinase sequence in potato results in decreased expression of sucrose synthase in tubers and loss of sucrose-inducibility of sucrose synthase transcripts in leaves. Plant J. 1998;14:195–202.View ArticleGoogle Scholar
- Tiessen A, Prescha K, Branscheid A, Palacios N, McKibban R, Halford N, Geigenberger P. Evidence that SNF1-related kinase and hexokinase are involved in separate sugar-signalling pathways modulating posttranslational redox activation of ADP-glucose pyrophosphorylase in potato tubers. Plant J. 2003;35:490–500.View ArticleGoogle Scholar
- Zhang Y, Shewry PR, Jones H, Barcelo P, Lazzeri PA, Halford NG. Expression of antisense SnRK1 protein kinase sequence causes abnormal pollen development and male sterility in transgenic barley. Plant J. 2001;28:431–42.View ArticleGoogle Scholar
- Radchuk R, Radchuk V, Weschke W, Borisjuk L, Weber H. Repressing the expression of the sucrose nonfermenting-1-related protein kinase gene in pea embryo causes pleiotropic defects of maturation similar to an abscisic acid-insensitive phenotype. Plant Physiol. 2006;140:263–78.View ArticleGoogle Scholar
- Bhaskar PB, Venkateshwaran M, Wu L, Ané JM, Jiang J. Agrobacterium mediated transient gene expression and silencing: a rapid tool for functional gene assay in potato. PLoS One. 2009;4:e5812.View ArticleGoogle Scholar
- Guerche P, Bellini C, Le Moullec JM, Caboche M, Guerche P, Bellini C, Le Moullec JM, Caboche M. Use of a transient expression assay for the optimization of direct gene transfer into tobacco mesophyll protoplasts by electroporation. Biochimie. 1987;69:621–28.View ArticleGoogle Scholar
- de Oliveira ML, Febres VJ, Costa MG, Moore GA, Otoni WC. High-efficiency Agrobacterium-mediated transformation of citrus via sonication and vacuum infiltration. Plant Cell Rep. 2009;28:387–95.View ArticleGoogle Scholar
- Díaz-Camino C, Annamalai P, Sanchez F, Kachroo A, Ghabrial SA. An effective virus-based gene silencing method for functional genomics studies in common bean. Plant Methods. 2011;13:7–16.Google Scholar
- Wu H, Sparks C, Amoah B, Jones HD. Factors influencing successful Agrobacterium-mediated genetic transformation of wheat. Plant Cell Rep. 2003;21:659–68.Google Scholar
- Montiel J, Nava N, Cárdenas L, Sánchez-López R, Arthikala MK, Santana O, Sánchez F, Quinto C. A Phaseolus vulgaris NADPH oxidase gene is required for root infection by Rhizobia. Plant & Cell Physiol. 2012;53:1751–67.View ArticleGoogle Scholar
- Wu FH, Shen SC, Lee LY, Lee SH, Chan MT, Lin CS. Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method. Plant Methods. 2009;5:16.View ArticleGoogle Scholar
- Zhu L, Wang BC, Zhou J, Chen LX, Dai CY, Duan CR. Protoplast isolation of callus in Echinacea augustifolia. Colloids Surf B: Biointerfaces. 2005;44:1–5.View ArticleGoogle Scholar
- Tee CS, Lee PS, Kiong ALP, Mahmood M. Optimisation of protoplast isolation protocols using in vitro leaves of Dendrobium crumenatum (pigeon orchid) African. J Agric Res. 2010;5:2685–93.Google Scholar
- Maeda E, Hagiwara T. Enzymatic isolation of protoplasts from the rice leaves and callus cultures. Proc Crop Sci Soc Jap. 1974;43:68–76.View ArticleGoogle Scholar
- Ohshima M, Toyama S. Studies on culture of cells and tissue of crop plants, I. survey on isolation and culture of protoplast from rice leaf sheath. Jap J Crop Sci. 1989;58:103–10.View ArticleGoogle Scholar
- Barros LMG, Valente VRN. Callus production from leaf protoplasts of various cultivars of bean (Phaseolus vulgaris L.). L Plant Cell Reports. 1986;5:124–6.View ArticleGoogle Scholar
- Pladys D, Dimitrijevic L, Rigaud J. Localization of a Protease in Protoplast Preparations in infected Cells of French Bean Nodules. Plant Physiol. 1991;97:1174–80.View ArticleGoogle Scholar
- Geerts P, Druart P, Ochatt S, Baudo JP. Protoplast fusion technology for somatic hybridisation in Phaseolus. Biotechnol Agron Soc Environ. 2008;12:41–6.Google Scholar
- Kouchi H, Fukai K, Hiroki K, Kiwamu M, Shigeyuki T. Isolation and enzymological characterization of infected and uninfected cell protoplasts from root nodules of Glycine max. Physiol Plant. 1988;73:327–34.View ArticleGoogle Scholar
- Kearns A, Whelan J, Young S, Elthon TE, Day DA. Tissue-specific expression of the alternative oxidase in soybean and siratro. Plant Physiol. 1992;99:712–7.View ArticleGoogle Scholar
- An CI, Sawada A, Fukusaki E, Kobayashi A. A transient RNA interference assay system using Arabidopsis protoplasts. Biosci Biotechnol Biochem. 2003;67:2674–7.View ArticleGoogle Scholar
- An CI, Sawada A, Kawaguchi Y, Fukusaki E, Kobayashi A. Transient RNAi induction against endogenous genes in Arabidopsis protoplasts using in vitro-prepared double-stranded RNA. Biosci Biotechnol Biochem. 2005;69:415–8.View ArticleGoogle Scholar
- Li JF, Park E, von Arnim AG, Nebenführ A. The FAST technique: a simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species. Plant Methods. 2009;5:6.View ArticleGoogle Scholar
- Manoj Kumar A, Reddy KN, Manjulatha M, Arellano ES, Sreevathsa R, Ganeshan G. A rapid and high-throughput identification of putative bell pepper transformants generated via in planta approach. Sci Horticult. 2011;129:898–903.View ArticleGoogle Scholar
- Broughton WJ, Dilworth MJ. Control of leghaemoglobin synthesis in snake beans. Biochem J. 1971;125:1075–80.View ArticleGoogle Scholar
- Valdés-López O, Arenas-Huertero C, Ramírez M, Girard L, Sánchez F, Vance CP, Luis Reyes J, Hernández G. Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signaling in common bean roots. Plant Cell Environ. 2008;31:1834–43.View ArticleGoogle Scholar
- Karimi M, Inzé D, Depicker A. Gateway vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 2002;7:193–95.View ArticleGoogle Scholar
- Hajdukiewicz P, Svab Z, Maliga P. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol. 1994;25:989–94.View ArticleGoogle Scholar
- Winans SC, Kerstetter RA, Nester EW. Transcriptional regulation of the virA and virG genes of Agrobacterium tumefaciens. J Bacteriol. 1988;170:4047–54.Google Scholar
- Islas-Flores T, Guillén G, Alvarado-Affantranger X, Lara-Flores M, Sánchez F, Villanueva MA. PvRACK1 loss-of-function impairs cell expansion and morphogenesis in Phaseolus vulgaris L. root nodules. Mol Plant Microbe Interact. 2011;24:819–26.View ArticleGoogle Scholar
- Borges A, Tsai SM, Caldas DG. Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses. Plant Cell Rep. 2012;31:827–38.View ArticleGoogle Scholar
- Manavella PA, Chan RL. Transient transformation of sunflower leaf discs via an Agrobacterium-mediated method: applications for gene expression and silencing studies. Nat Protoc. 2009;4:1699–707.View ArticleGoogle Scholar
- Marion J, Bach L, Bellec Y, Meyer C, Gissot L, Faure JD. Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant J. 2008;56:169–79.View ArticleGoogle Scholar