- Research article
- Open Access
Replacement of carbohydrate binding modules improves acetyl xylan esterase activity and its synergistic hydrolysis of different substrates with xylanase
BMC Biotechnology volume 16, Article number: 73 (2016)
Acetylation of the xylan backbone was a major obstacle to enzymatic decomposition. Removal of acetyl groups by acetyl xylan esterases (AXEs) is essential for completely enzymatic hydrolysis of xylan. Appended carbohydrate binding modules (CBMs) can promote the enzymatic deconstruction of plant cell walls by targeting and proximity effects. Fungal acetyl xylan esterases are strictly appended to cellulose-specific CBM1. It is still unclear whether xylan-specific CBMs have a greater advantage than CBM1 in potentiating the activity of fungal deacetylating enzymes and its synergistic hydrolysis of different substrates with xylanase.
Three recombinant AXE1s fused with different xylan-specific CBMs, together with wild-type AXE1 with CBM1 and CBM1-deleted mutant AXE1dC, were constructed in this study. The optimal temperature and pH of recombinant AXE1s was 50 °C and 8.0 (except AXE1dC-CBM6), respectively. Cellulose-specific CBM1 in AXE1 obviously contributed to its catalytic action against substrates compared with AXE1dC. However, replacement of CBM1 with xylan-specific CBM4-2 significantly enhanced AXE1 thermostability and catalytic activity against soluble substrate 4-methylumbelliferyl acetate. Whereas replacements with xylan-specific CBM6 and CBM22-2 were more effective in enzymatic release of acetic acid from destarched wheat bran, NaClO2-treated wheat straw, and water-insoluble wheat arabinoxylan compared to AXE1. Moreover, replacement with CBM6 and CBM22-2 also resulted in higher degree releases of reducing sugar and acetic acid from different substrates when simultaneous hydrolysis with xylanase. A good linear relationship exists between the acetic acid and reducing sugar release.
Our findings suggested that the replacement with CBM6 and CBM22-2 not only significantly improved the catalysis efficiency of AXE1, but also increased its synergistic hydrolysis of different substrates with xylanase, indicating the significance of targeting effect in AXE1 catalysis mediated by xylan-specific CBMs.
Xylan is the major constituent of hemicellulose and the second most abundant renewable resource in nature. Xylan serves as the source of C-5 sugars used in the production of biofuels, xylooligosaccharides or other chemicals . Xylan generally contains heterogeneous substituents such as L-arabinose, O-acetyl, ferulic (4-hydroxy-3- methoxycinnamic) acid, p-coumaric (4-hydroxycinnamic) acid and 4-O-methyl-D-glucuronic acid [2, 3]. Therefore, complete hydrolysis of xylans requires not only glycoside hydrolases (endo-β-1,4-xylanases, β-xylosidases), but also deacetylating enzymes, namely, acetyl xylan esterases (EC 18.104.22.168, AXEs), and other side substituent cleaving enzymes, including α-L-arabinofuranosidases (EC 22.214.171.124), α-glucuronidases (EC 126.96.36.199) and ferulic/coumaric acid esterases (EC 188.8.131.52) . Acetylation of the xylan backbone was thought to be a major obstacle to enzymatic decomposition [5, 6]. The role of acetyl xylan esterases (AXEs) is to remove acetyl groups and create new sites for productive binding of glycoside hydrolases, consequently enhancing xylan accessibility and enabling complete hydrolysis .
Synergistic actions between xylanases and acetyl xylan esterases have been reported. An acetyl xylan esterase (BnaA) from Neocallimastix patriciarum showed a significant synergistic effect in combination with a recombinant xylanase (XynA) on the degradation of delignined spear grass. More reducing sugars were released by adding BnaA and XynA simultaneously than by XynA alone . Tong et al.  found that the overall xylose yield from wheat arabinoxylan hydrolysis was 8 % with xylanase treatment and increased to 34 % when xylanase was combined with AXE from Chaetomium thermophilum. Furthermore, such enzymatic release of acetyl groups by AXE not only enhanced the solubilization of xylan to some extent and, but also increased the subsequent hydrolysis of cellulose by cellulases .
In general, cellulases and hemicellulases are modular enzymes in which the catalytic domain is appended to one or more noncatalytic carbohydrate binding modules (CBMs) . CBMs have the ability to enhance the hydrolysis of insoluble carbohydrate by concentrating the parental enzyme at their target polysaccharide [12, 13]. The Carbohydrate Active Enzyme (CAZy) database (http://www.cazy.org/Carbohydrate-Binding-Modules) currently lists 74 CBM families classified based on amino acid similarity . Binding specificity can vary both between and within families [15, 16], for example, CBM1 binds specifically to cellulose , whereas CBM 4-2, 6 and 22-2 bind specifically to xylan [18–20].
The bacterial cellulolytic and hemicellulolytic enzymes contain various CBMs with diverse polysaccharide recognition specificity, paralleling the considerable diversity in the target substrate of the catalytic module of the enzymes. Thus, the catalytic domains from cellulases [21, 22], xylanases  and mannanases  are generally appended to cellulose, xylan and mannan-binding CBMs, respectively. Therefore, different types of CBMs can assist the appended catalytic domain targeting to a particular substrate and potentiate the catalytic rates of enzymes [25–29]. In contrast, the catalytic domains in fungal cellulolytic and hemicellulolytic enzymes are strictly appended to CBM1. That is, numerous enzymes that do not cleave cellulose contain CBM1 that recognize the celluolose [30, 31]. CBM1 can potentiate enzyme activity of the catalytic module against hemicellulose due to its proximity effects, because in intact plant cell wall, hemicelluloses are in close association with cellulose .
However, this potentiation by targeting and proximity effect of CBMs might rely on the types of enzymes, and probably substrates as well [33, 34]. For example, CBM15, a xylan-binding module, can potentiate the activity of Xyl11A from Neocallimastix patricarium but not that of Xyl10B from Cellvibrio mixtus . The enhancements of enzyme activity by additional CBM were extensively studied in recent years, but most of them were related to the main-chain degrading enzymes such as cellulases and xylanases [35–38]. It is still unclear whether xylan-specific CBMs are more effective than CBM1 in potentiating the activity of deacetylating enzymes by targeting and proximity effects when against substrates with different structures and cellulose contents. With this end, an acetyl xylan esterase (AXE1) from Volvariella volvacea, which consisted of a family 1 catalytic domain and a CBM1 linked with serine and threonine-rich peptide, was investigated in this study . Three CBMs from family 4, 6, and 22 [40–42], respectively, which display different specificity for xylans, were selected to replace CBM1 in AXE1. The influences of CBMs replacement on its enzyme activity and its synergistic hydrolysis of different substrates with xylanase were comparatively studied. The replacement of CBM1 in AXE1 with xylan-specific binding modules resulted in a better catalysis performance than wild-type enzyme did, which provided a rational method to design better AXEs via engineered fusion to CBMs with different binding specificities.
Results and discussion
To evaluate the influences of CBMs replacement on enzyme activity and its synergistic hydrolysis for different substrates with xylanase, five recombinant AXE1s with and without CBMs were designed, that is, AXE1, a wild-type enzyme; AXE1dC, a CBM1-deleted form but containing the linker; and AXE1dC-CBM4-2/6/22-2, a fusion of AXE1dC and CBM4-2/6/22-2, respectively. Schematic representations of five rAXE1s were shown in Fig. 1.
Purification and molecular weight analysis
The recombinant proteins were purified in a one-step procedure by affinity chromatography using Ni-NTA agarose gel. The theoretical molecular weights for purified rAXE1s were estimated to be 32.3 kDa (AXE1dC), 36.4 kDa (AXE1), 46.5 kDa (AXE1dC-CBM6), 50.5 kDa (AXE1dC-CBM4-2) and 50.6 kDa (AXE1dC-CBM22-2), respectively. However, SDS-PAGE analysis revealed that the purified enzymes migrated as two bands. The two forms were attributed to different degrees of glycosylation at the two N-glycosylation sites present in the protein. After endoglycosidase H (endo H) treatment, the proteins became a single band except AXE1dC-CBM4-2. But the molecular masses of rAXE1s were still slightly higher than the estimated ones (Fig. 2). The incomplete deglycosylation of rAXE1s may be due to O-glycosylation sites located on rAXE1s, which were found by O-β-GlcNAc attachment sites during the eukaryotic protein sequence determination using the YinOYang 1.2 tool (http://www.cbs.dtu.dk/services/YinOYang/).
Specific activity and biochemical properties of rAXE1s towards soluble substrate
The biochemical properties of rAXE1s were compared by using 4-methylumbelliferyl acetate as the substrate. Temperature optima for all rAXE1s were 50 °C and pH optima for rAXE1s were pH 8.0 except AXE1dC-CBM6, which was pH 8.5 (Fig. 3a and b). AXEdC-CBM4-2 retained almost 40 % of activity after incubation at 55 °C for 90 min, in contrast, AXE1 retained only 3 %, indicating that replacement of CBM1 with CBM4-2 resulted in more than 7-fold increase of the thermostability compared to wild-type enzyme. AXE1dC-CBM22-2 also showed slightly higher thermostabilty than AXE1 (Fig. 3c). No significant differences were found in the pH stability of these enzymes. All of the enzymes had a broad range of pH tolerance (Fig. 3d).
Thermostability improvement by fusion with CBM4-2 and CBM22-2 might benefit from their thermophilic properties. CBM4-2 from the thermophilic bacterium Rhodothermus marinus Xyn10A had an estimated denaturation temperature of 87.4 °C, indicating it is a thermostable CBM . CBM22-2 from Clostridium thermocellum Xyn10B had previously been described as a thermostabilizing domain on account of their apparent ability to confer thermostability to the catalytic module . Thermostability improvement by fusion with thermostable CBM was previously reported for some cellulases and hemicellulases. For example, the chimeric enzyme comprising feruloyl esterase and CBM42 retained 40 % of its activity after incubation at 55 °C for 30 min, whereas, the native enzyme almost lost its activity . Voutilainen et al.  reported that the adding of CBM1, CBM2 or CBM3 to the single-module cellobiohydrolase (Cel7A) from a thermophilic fungus Talaromyces emersonii increased the unfolding temperatures from 65 to 74 °C, 72 and 75 °C, respectively. Thermostable enzymes offer potential benefits in the hydrolysis of substrates, leading to improvement of the overall economy of the process .
Furthermore, fusion of CBM4-2 significantly enhanced the specific activity, the activity of AXE1dC-CBM4-2 towards 4-methylumbelliferyl acetate, was twice as high as AXE1. Kinetic parameters analysis also showed that the V max and K cat/K m value of AXE1dC-CBM4-2 was nearly two-fold higher compared to AXE1 (Table 1). But no significant difference of the specific activity was observed between AXE1 and other mutant enzymes (Table 1). It might be due to the intrinsic property of CBM4-2 or/and a favorable structural arrangement between the binding module and the catalytic domain .
Binding specificity of rAXE1s
The ligand-binding properties of CBM1, 4-2, 6 and 22-2 had been characterized previously. CBM1 bound specifically to cellulose surfaces but not to mannan and xylan . CBM4-2 showed high affinity for different soluble xylan, including birch xylan, wheat arabinoxylan, oat-spelt xylan and larchwood xylan, and phosphoric-acid swollen cellulose, but to Avicel very slightly [43, 50]. CBM6 had five sugar-binding sites and could accommodate highly decorated xylans but interacted weakly with soluble forms of cellulose [41, 51]. CBM22-2 had a cleft harboring a binding site for xylan. This protein could bind specifically to xylooligosaccharides and various substituted xylans, especially oat spelt xylan, wheat and rye arabinoxylan .
However, these substrates were restricted to purified polysaccharides that had an invariant chemical structure of β-1,4-linked xylose moieties. Here, three more complex substrates, including destarched wheat bran, NaClO2-treated wheat straw and water-insoluble wheat arabinoxylan (inAX), together with Avicel, were used in binding experiments to examine the specificity of CBMs. Table 2 gave the composition of three lignocellulose substrates.
Compared with earlier studies with pure xylans, AXE1dC-CBM4-2, AXE1dC-CBM6 and AXE1dC-CBM22-2 displayed a less capability to bind to substrates. As shown in Fig. 4, the proteins were mainly left in unbound fraction when rAXE1s were incubated with substrates at 0 °C for 1 h, except AXE1, which bound effectively to Avicel (Fig. 4a). AXE1dC was totally unable to bind to Avicel and other substrates. AXE1dC-CBM6 and AXE1dC-CBM22-2 bound slightly more to lignocellulose substrates than Avicel. Avicel is not pure cellulose but contains also xylan, which explained the binding of xylan-specific CBM variants with Avicel. However, AXE1dC-CBM4-2 could just bind to these four insoluble substrates very slightly. AXE1 also bound weakly to destarched wheat bran, NaClO2-treated wheat straw and inAX, probably due to simultaneous existence of cellulose in these substrates (Fig. 4b, c, d).
Influence of different CBMs on the release of acetic acid from arabinoxylans
During the first hour, the release of acetic acid was very poor (below 3 %), but as time increased, it raised dramatically (Fig. 5). After a hydrolysis for 24 h, the cumulative release of acetic acid from inAX was the highest (over 15 %), followed by destarched wheat bran (about 14 %) and NaClO2-treated wheat straw (less than 10 %), although NaClO2-treated wheat straw was richest in acetyl groups (Table 3). Thus might be due to the low accessibility of acetyl groups in NaClO2-treated wheat straw. Overall, the release of acetic acid by rAXE1s in present study was much higher than that of AXE from T. reesei against hydrothermally pretreated wheat straw . To some extent, the differences of pretreatment method of substrates and enzymes origins might cause the distinction of enzymatic hydrolysis yield.
As expected, all rAXE1s with CBM displayed a higher capability in release of acetic acid from destarched wheat bran, NaClO2-treated wheat straw and inAX than AXE1dC, indicating the potentiation effect of CBM on rAXE1s activity. Furthermore, compared to AXE1, the replacement of CBM1 with CBM6 and CBM22-2, which bind to a broad range of xylans, resulted in 10.64, 13 and 13.45 %, and 8.47, 6.11 and 5.57 % more increases in release of acetyl groups from destarched wheat bran, NaClO2-treated wheat straw and inAX, respectively. AXE1dC-CBM4-2 displayed similar capacity in release of acetic acid as AXE1 (Table 3). CBMs can potentiate the appended carbohydrate-active enzyme action on lignocellulosic substrates via targeting and proximity effects depended on the sources of lignocellulosic substrates . Mai-Gisondi et al.  investigated the ability of a family 3 cellulose-binding module (CBM3) fusion to enhance the activity of an acetylxylan esterase from Aspergillus nidulans (AnAXE, AN6093.2). It was found that the CBM3 fusion did not affect AnAXE catalytic efficiency on soluble substrates such as p-nitrophenyl acetate and 4-methylumbelliferyl acetate, or corncob xylan, but increased the activity by two to four times on cellulose acetate. The elevated deacetylating capacity of AXE1 was mainly attributed to the proximity effect of CBM1 because of its cellulose-specific binding property. Thus, CBM1 increased the concentration of AXE1 in the vicinity of the target substrate. On the other hand, the hydrolysis with AXE1dC-CBM4-2, AXE1dC-CBM6 and AXE1dC-CBM22-2 might be affected by targeting effect via assisting the enzyme attached directly to xylan. These results indicated the significance of targeting effect in AXE1 acetic acid release by xylan-specific CBMs, especially with CBM6 and CBM22-2.
Influence of different CBMs on the synergistic actions between rAXE1s and XynII
It could be seen that the combination of rAXE1s and XynII was more effective in each case than XynII alone (Fig. 6), implying the synergistic actions between rAXE1s and XynII against destarched wheat bran, NaClO2-treated wheat straw and water-insoluble wheat arabinoxylan (inAX) . Overall, the release of total reducing sugar from inAX was the highest, followed by that of destarched wheat bran and NaClO2-treated wheat straw.
In general, the combination of rAXE1s with CBMs and XynII displayed a more obvious synergy in comparison to the combination of AXE1dC and XynII, implying the positive effect of CBMs on synergistic actions between rAXE1s and XynII against substrates. Moreover, AXE1dC-CBM6 and AXE1dC-CBM22-2 had a more positive impact on the synergistic actions than AXE1. The combination of AXE1dC-CBM6 and XynII was the highest, enhancing xylan hydrolysis by 29, 28, 34 % than XynII alone, which were 9.68, 9.73, 10.36 % more increases compared to the combination of AXE1 and XynII in the hydrolysis of destarched wheat bran, NaClO2-treated wheat straw and inAX for 24 h, respectively. The corresponding values for AXE1dC-CBM22-2 were 26, 24, 30 % more than XynII alone, and 6.61, 4.16, 7.9 % more increases compared to AXE1. However, there was no obvious distinction between AXE1dC-CBM4-2 and AXE1. The different binding specificities of CBMs belonging to different families might contribute to their difference in synergistic actions towards same substrates via targeting or proximity effects . Since the xylan-specific CBMs, especially for CBM6 and CBM22-2, can target enzymes directly on the particular substrate xylan and potentiate the catalytic rates of AXE1dC-CBM6 and AXE1dC-CBM22-2, therefore increasing the efficiency of synergistic hydrolysis in comparison to AXE1 and AXE1dC.
The released acetic acid was also quantified in the synergism experiments. With the same rAXE1s enzyme loading, the adding of XynII improved the release of acetic acid as a whole (Fig. 7). As for destarched wheat bran and inAX, the releases of acetic acid were increased by about 15–17 % in each interval in synergism experiments than rAXE1 alone. However, a distinction of acetic acid release pattern existed between NaClO2-treated wheat straw with destarched wheat bran and inAX. The adding of XynII dramatically accelerated the release rate of acetic acid particularly in the first 12 h when NaClO2-treated wheat straw was used. Specially, the simultaneous action of XynII and AXE1dC-CBM4-2 increased the release of acetic acid by 90 and 38 % as compared to AXE1dC-CBM4-2 alone at the first and sixth hour. For synergism of XynII and AXE1dC-CBM6 or AXE1dC-CBM22-2, the corresponding values were 86, 46 and 100 %, 61 %, respectively. However, after 24 h, the improvement was not distinct between AXE1dC-CBM4-2 or AXE1dC-CBM22-2 alone with corresponding synergism with XynII. Perhaps, xylan-specific CBM4-2 and CBM22-2 targeted to the xylan in earlier stages when xylan in NaClO2-treated wheat straw was available, leading to accelerate the release of acetic acid during the first 12 h (Fig. 7c and e). But the targeting effect faded with the removal of xylan during the last 12 h .
The hydrolysis products of synergistic actions between rAXE1s and XynII were determined by HPAEC-PAD. The main products were X1 and X2 with tiny of X3. X2 was much higher than X1, whereas no X4 or above was detected. As shown in Table 4, rAXE1s with CBM6 and CBM22-2 caused the highest increases in the total amount of X1, X2 and X3 than other rAXE1s when simultaneous hydrolysis with XynII. This result was consistent well with the reducing sugar determined by Somogyi method (Fig. 6). It is interesting to note the ratios of X1 and X2 released from different substrates are different. Although the hemicellulose fraction of these three lignocellulose substrates is arabinoxylan, the structure and composition of arabinoxylan are still different, which may cause the different enzymatic hydrolysis efficiency and then the ratios of X1 and X2 from different substrates.
A high linear correlation exists between the release of acetic acid and reducing sugar (Fig. 8). The R 2 of destarched wheat bran, NaClO2-treated wheat straw and inAX was 0.8493, 0.9296 and 0.9512, respectively. This suggested that the removal of acetyl groups contributed to the release of xylose from xylans. For the synergistic actions between rAXE1s and XynII, the highest enhancement was obtained in inAX due to the highest release of acetic acid as compared with destarched wheat bran and NaClO2-treated wheat straw. This suggested that the synergy was more pronounced in the materials containing a high accessibility of acetyl groups. These results were in good agreement with reports on the combination of endoxylanase and AXE in increasing the xylan conversion, and consequently the cellulose conversion to glucose by cellulolytic enzymes [3, 54].
Cellulose-specific CBM1 in AXE1 obviously contributes to its catalytic action against lignocellulosic substrates compared with AXE1dC. However, the replacement of CBM1 with xylan-specific CBM4-2 significantly enhanced AXE1 thermostability and catalytic activity against soluble substrate 4-methylumbelliferyl acetate. Whereas replacement with xylan-specific CBM6 and CBM22-2 were more effective in enzymatic release of acetic acid from destarched wheat bran, NaClO2-treated wheat straw, and water-insoluble wheat arabinoxylan compared to AXE1. Moreover, replacement with CBM6 and CBM22-2 also resulted in higher degree releases of xylose and acetic acid from different lignocellulosic substrates when simultaneous hydrolysis with xylanase. A good linear relationship exists between acetic acid and the reducing sugar release. Our findings suggested the significance of targeting effect in AXE1 catalysis against lignocellulosic substrates mediated by xylan-specific CBMs.
Gene, strains and chemicals
The plasmid pPICZαA-axe1, which has been previously constructed to express mature AXE1 , was used as a template for recombinant acetyl xylan esterases construction. The gene sequences encoding xylan-specific CBM4-2, CBM6, and CBM22-2 modules were originally from Rhodothermus marinus Xyn10A, Clostridium thermocellum Xyn11A, and Clostridium thermocellum Xyn10B, respectively (Additional file 1) [40–42]. The corresponding gene fragments were synthesized by Springen Biotech Co. (Jiangsu, China) and carried into plasmids pUC57 with modified codon according to the codon preference of Pichia pastoris. Escherichia coli DH5α was used for plasmid construction and propagation. P. pastoris KM71H and the plasmid pPICZαA from Invitrogen (Carlsbad, CA, USA) were used for heterologous expression.
The substrates 4-methylumbelliferyl acetate and Avicel were purchased from Sigma-Aldrich (St. Louis, MO). Wheat bran was obtained from Yongfang (Shandong, China) and wheat straw was obtained from Lian Yungang (Jiangsu, China). Water-insoluble wheat arabinoxylan (inAX) was purchased from Megazyme (P-WAXYI, Wicklow Ireland). TransStart FastPfu DNA polymerase and T4 DNA ligase were purchased from TransGen Biotech (Beijing, China). The restriction enzymes and endoglycosidase H were purchased from New England Biolabs (Beverly, MA, USA). All other chemicals used were analytical grade.
Construction of recombinant plasmids
The cbm1-deleted derivative, axe1dC, was amplified by the polymerase chain reaction (PCR) using pPICZαA-axe1 as template and the axe1dC F1 forward primer and axe1dC R1 reverse primer (Additional file 2: Table S1). EcoRI and NotI restriction enzyme sites were introduced to the 5′ and 3′ of axe1dC DNA fragment. After digestion, the fragment was ligated at the EcoRI/NotI sites of pPICZαA Pichia expression vector to yield the expression plasmid pPICZαA-axe1dC. Three CBM-fused derivatives, axe1dC-cbm4-2, axe1dC-cbm6, and axe1dC-cbm22-2 were created by combining axe1dC with the fragment encoding CBM4-2, CBM6 and CBM22-2, respectively. The fragment encoding catalytic domain and linker, axe1dC, was amplified by PCR using pPICZαA-axe1 as template and the axe1dC F2 forward primer and axe1dC R2 reverse primer. EcoRI and SacII restriction enzyme sites were introduced to the 5′ and 3′ of axe1dC DNA fragment. The cbm4-2 DNA fragment was amplified from pUC57-cbm4-2 using the cbm4-2 F3 forward primer and cbm4-2 R3 reverse primer. The cbm6 DNA fragment was amplified from pUC57-cbm6 using the cbm6 F4 forward primer and cbm6 R4 reverse primer. And the cbm22-2 DNA fragment was amplified from pUC57-cbm22-2 using the cbm22-2 F5 forward primer and cbm22-2 R5 reverse primer. SacII and NotI restriction enzyme sites were introduced to the 5′ and 3′ of cbm4-2, cbm6 and cbm22-2 DNA fragment, respectively. After digestion, the fragments axe1dC and cbm4-2, cbm6, cbm22-2 were ligated at the EcoRI/NotI sites of pPICZαA to yield the plasmids pPICZαA-axe1dC-cbm4-2, pPICZαA-axe1dC-cbm6, pPICZαA-axe1dC-cbm22-2, respectively (Additional file 3: Figure S1). All rAXE1s, including wild-type enzyme AXE1, were fused with a 6-histidine tag at the C-terminus to facilitate purification using affinity chromatography.
Expression, purification and molecular weight analysis
The plasmids were linearized using SacI and transformed into Pichia pastoris KM71H competent cells by electroporation according to the Pichia expression system manual from Invitrogen. All rAXE1s, including AXE1, were produced by methanol induction at a final concentration of 2.5 % according to the method described previously . Supernatants from 25 mL cultures were collected by centrifugation (5000 g for 15 min) and then the crude enzymes were purified by affinity chromatography using Ni-NTA Agarose gel (Qiagen, Valencia, CA, USA) according to the manufacturer’s manual. The enzyme homogeneity and molecular weights of purified enzymes were estimated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) [12 % (w/v)]. Purified rAXE1s were deglycosylated with endoglycosidase H and analyzed by SDS-PAGE. XynII was produced and purified as described previously .
Specific activity and biochemical properties of rAXE1s towards soluble substrate
The rAXE1s activity were determined spectrophotometrically at 50 °C by measuring the increasing in A354 nm during the initial 1 min of the assay resulting from the release of 4-methylumbelliferone from 4-methylumbelliferyl acetate . Reaction mixtures consisted of: 1398 μL 1 M potassium phosphate buffer (pH 8.0), 100 μL 10 mM 4-methylumbelliferyl acetate and 2 μL purified enzyme. One unit of enzyme activity (IU) was defined as the quantity of enzyme required to release 1 μmol of 4-methylumbelliferone per minute.
Optimal pH and temperature values were determined over the ranges pH 6.0–9.0 (universal buffer: 50 mM H3PO4, 50 mM CH3COOH, 50 mM H3BO3, pH adjusted by 0.2 M NaOH at 25 °C) and 40–60 °C, respectively. To determine pH stability, rAXE1s were incubated at different buffer (pH 3.0–11.0) at 4 °C for 12 h. Thermostability of rAXE1s were determined by being incubated at 55 °C for 0–90 min. Residual activities towards 4-methylumbelliferyl acetate were compared with control samples. The kinetic constants for rAXE1s were assayed by measuring the rate of 4-methylumbelliferyl acetate hydrolysis under the standard assay conditions using a substrate concentration range of 0.33–1.33 mM.
Substrate composition analysis
The preparation of destarched wheat bran and NaClO2-treated wheat straw was described by Wang et al.  and Saarnio et al. [58, 59], respectively. The carbohydrate and lignin content of destarched wheat bran, NaClO2-treated wheat straw and inAX was determined by the standard procedure of NREL . The acetic acid content was determined after alkaline hydrolysis (2 M NaOH, 4 h, 70 °C)  and quantified by the Acetic Acid Assay Kit (Megazyme) according to the manufacturer’s instructions.
Binding specificity of rAXE1s
Since the optimal pH of xylanase used in synergistic hydrolysis was 7.0, the substrate binding and hydrolysis experiment on insoluble substrates were both carried out at pH 7.0. Reaction mixtures (2 mL) containing 50 mg substrate and 250 μg purified rAXE1s in pre-cooled 100 mM potassium phosphate buffer (pH 7.0) were incubated on a rotating shaker (200 r.p.m.) at 0 °C for 60 min. After incubation, samples were centrifuged (10,000 g, 4 °C) for 3 min. The unbound proteins in the supernatant were concentrated by PEG6000. The precipitations were washed three times with pre-cooled 100 mM potassium phosphate buffer (pH 7.0). The unbound and bound proteins in the supernatants and precipitates, respectively, were boiled with SDS-sample buffer for 5 min and analyzed by SDS-PAGE analysis.
Influence of different CBMs on the enzymatic release of acetic acid from arabinoxylans
Reaction mixtures consisted of: 0.1 g destarched wheat bran, NaClO2-treated wheat straw or inAX [2 % (w/v) suspension in 100 mM sodium citrate buffer, pH 7.0] with 0.005 μmol of purified enzyme in a total volume of 5 mL. Mixtures were incubated at 50 °C for 1, 6, 12, 24 h with orbital shaking (150 r.p.m.) and then boiled at 99 °C for 10 min. All hydrolysis experiments were carried out in duplicates. After centrifugation, the acetic acid in the supernatant was quantified using the Acetic Acid Assay Kit (Megazyme) according to the manufacturer’s instructions.
Influence of different CBMs on the synergistic actions between rAXE1s and XynII
The synergy between recombinant acetyl xylan esterases and xylanase in the hydrolysis of the destarched wheat bran, NaClO2-treated wheat straw and inAX, was carried out at pH 7.0 and 50 °C. rAXE1s (100 IU) and XynII (25 IU) were added simultaneously to the reaction mixtures containing 0.1 g substrate and a moderate amount of 100 mM sodium citrate buffer (pH 7.0) in a total volume of 5 mL. A final concentration of 25 mg/L Ampicillin and Zeocin were added to prevent the reducing sugar consumption of microbes. Mixtures were incubated at 50 °C for 1, 6, 12, 24 h with orbital shaking (150 r.p.m.) and then boiled at 99 °C for 10 min. The acetic acid and reducing sugar released were quantified using the Acetic Assay Kit and Somogyi-Nelson method with xylose as standard, respectively. Xylose and xylooligosaccharides in the hydrolysates were analyzed at 25 °C using a Carbo-Pac PA200 column (3 × 250 mm) fitted to an ICS-3000 high-performance anion exchange chromatography system (Dionex, Sunnyvale, CA, USA) with pulsed amperometric detection (HPAEC-PAD). A dual mobile-phase system (A, 100 mM NaOH; B, 500 mM sodium acetate) was applied, and saccharides were eluted using a linear sodium acetate gradient (B:0–24 % in 40 min; 0.3 ml/min), followed by elution with 100 mM NaOH (15 min; 0.3 ml/min) as previously described .
Acetyl xylan esterase 1 from Volvariella volvacea
CBM1-deleted acetyl xylan esterase 1
Fusion of CBM1-deleted acetyl xylan esterase 1 and the second family 22 carbohydrate binding module from Clostridium thermocellum xylanase 10B
Fusion of CBM1-deleted acetyl xylan esterase 1 and the second family 4 carbohydrate binding module from Rhodothermus marinus xylanase 10A
Fusion of CBM1-deleted acetyl xylan esterase 1 and family 6 carbohydrate binding module from Clostridium thermocellum xylanase 11A
Carbohydrate binding module
High-performance anion exchange chromatography coupled with pulsed amperometric detection
Water-insoluble wheat arabinoxylan
Polyethylene Glycol 6000
Recombinant AXE1s including AXE1dC, AXE1, AXE1dC-CBM4-2, AXE1dC-CBM6, AXE1dC-CBM22-2
Xylanase II from Volvariella volvacea
Merino ST, Cherry J. Progress and challenges in enzyme development for biomass utilization. Adv Biochem Engin/Biotechnol. 2007;108:95–120.
Coughlan MP, Hazlewood GP. beta-1,4-D-Xylan-degrading enzyme systems: biochemistry, molecular biology and applications. Biotechnol Appl Biochem. 1993;17:259–89.
Selig MJ, Adney WS, Himmel ME, Decker SR. The impact of cell wall acetylation on corn stover hydrolysis by cellulolytic and xylanolytic enzymes. Cellulose. 2009;16:711–22.
Biely P. Microbial carbohydrate esterases deacetylating plant polysaccharides. Biotechnol Adv. 2012;30:1575–88.
Neumüller KG, Streekstra H, Gruppen H, Schols HA. Trichoderma longibrachiatum acetyl xylan esterase 1 enhances hemicellulolytic preparations to degrade corn silage polysaccharides. Bioresour Technol. 2014;163:64–73.
Poutanen K, Rättö M, Puls J, Viikari L. Evaluation of different microbial xylanolytic system. J Biotechnol. 1987;6:49–60.
Grohmann K, Mitchell DJ, Himmel ME, Dale BE, Schroeder HA. The role of ester groups in resistance of plant cell wall polysaccharides to enzymatic hydrolysis. Appl Biochem and Biotechnol. 1989;20:45–61.
Cybinski DH, Layton I, Lowry JB, Dalrymple BP. An acetylxylan esterase and a xylanase expressed from genes cloned from the ruminal fungus Neocallimastix pareiciarum act synergistically to degrade acetylated xylans. Appl Microbiol Biotechnol. 1999;52:221–5.
Tong X, Lange L, Grell MN, Busk PK. Hydrolysis of wheat arabinoxylan by two acetyl xylan esterases from Chaetomium thermophilum. Appl Biochem Biotechnol. 2015;175:1139–52.
Zhang JH, Siika-aho M, Tenkanen M, Viikari L. The role of acetyl xylan esterase in the solubilization of xylan and enzymatic hydrolysis of wheat straw and giant reed. Biotechnol Biofuels. 2011;4:60.
Tomme P, Warren RAJ, Gilkes NR. Cellulose hydrolysis by bacteria and fungi. Adv Microb Physiol. 1995;37:1–81.
Várnai A, Mäkelä MR, Djajadi DT, Rahikainen J, Hatakka A, Viikari L. Carbohydrate-binding modules of fungal cellulases: occurrence in nature, function, and relevance in industrial biomass conversion. Adv Appl Microbiol. 2014;88:103–65.
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J. 2004;382:769–81.
Lim S, Chundawat SPS, Fox BG. Expression, purification and characterization of a functional carbohydrate-binding module from Streptomyces sp. SirexAA-E Protein Expr Purif. 2014;98:1–9.
Guillen D, Sanchez S, Rodriguez-Sanoja R. Carbohydrate-binding domains: multiplicity of biological roles. Appl Microbiol Biotechnol. 2010;85(5):1241–9.
Abbott DW, Boraston AB. Quantitative approaches to the analysis of carbohydrate-binding module function. Methods Enzymol. 2012;510:211–31.
Várnai A, Siika-aho M, Viikari L. Carbohydrate-binding modules (CBMs) revisited: reduced amount of water counterbalances the need for CBMs. Biotechnol Biofuels. 2013;6:30.
Gunnarsson LC, Zhou Q, Montanier C, Karlsson EN, Brumer III H, Ohlin M. Engineered xyloglucan specificity in a carbohydrate-binding module. Glycobiology. 2006;16(12):1171–80.
Fernandes AC, Fontes CMGA, Gilbert FHJ, Hazlewood GP, Fernandes TH, Ferreira LMA. Homologous xylanases from Clostridium thermocellum: evidence for bi-functional activity, synergism between xylanase catalytic modules and the presence of xylan-binding domains in enzyme complexes. Biochem J. 1999;342(1):105–10.
Xie H, Gilbert HJ, Charnock SJ, Davies GJ, Williamson MP, Simpson PJ, Raghothama S, Fontes CMGA, Dias FMV, Ferreira LMA, Bolam DN. Clostridium thermocellum Xyn10B carbohydrate-binding module 22–2: the role of conserved amino acids in ligand binding. Biochemistry. 2001;40(31):9167–76.
Xu GY, Ong E, Gilkes NR, Kilburn DG, Muhandiram DR, Harris-Brandts M, Carver JP, Kay LE, Harvey TS. Solution structure of a cellulose-binding domain from Cellulomonas fimi by nuclear magnetic resonance spectroscopy. Biochemistry. 1995;34:6993–7009.
Tomme P, Creagh AL, Kilburn DG, Haynes CA. Interaction of polysaccharides with the N-terminal cellulose-binding domain of Cellulomonas fimi CenC. 1. Binding specificity and calorimetric analysis. Biochemistry. 1996;35:13885–94.
Simpson PJ, Bolam DN, Cooper A, Ciruela A, Hazlewood GP, Gilbert HJ, Williamson MP. A family IIb xylan-binding domain has a similar secondary structure to a homologous family IIa cellulose-binding domain but different ligand specificity. Structure. 1999;7:853–64.
Stoll D, Boraston A, Stalbrand H, McLean BW, Kilburn DG, Warren RAJ. Mannanase Man26A from Cellulomonas fimi has a mannan-binding module. FEMS Microbiol Lett. 2000;183:265–9.
Hall J, Black GW, Ferreira LMA, Millward-Sadler SJ, Ali BRS, Hazlewood GP, Gilbert HJ. The non-catalytic cellulose-binding domain of a novel cellulase from Pseudomonas fluorescens subsp. cellulosa is important for the efficient hydrolysis of Avicel. Biochem J. 1995;309:749–56.
Jamal-Talabani S, Boraston AB, Turkenburg JP, Tarbouriech N, Ducros VMA, Davies GJ. Ab initio structure determination and functional characterization of CBM36: a new family of calcium-dependent carbohydrate binding modules. Structure. 2004;12(7):1177–87.
Montanier C, Bueren AL, Dumon C, Flint JE, Correia MA, Prates JA, Firbank SJ, Lewis RJ. Evidence that family 35 carbohydrate binding modules display conserved specificity but divergent function. Proc Natl Acad Sci U S A. 2009;106(9):3065–70.
Cuskin F, Flint JE, Gloster TM, Morland C, Baslé A, Henrissat B, Coutinho PM, Strazzulli A, Solovyova AS, Davies GJ, Gilbert HJ. How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity. Proc Natl Acad Sci U S A. 2012;109(51):20889–94.
Gao D, Chundawat SPS, Sethi A, Balan V, Gnanakaran S, Dale BE. Increased enzyme binding to substrate is not necessary for more efficient cellulose hydrolysis. Proc Natl Acad Sci U S A. 2013;110(27):10922–7.
Puchart V, Berrin JG, Haon M, Biely P. A unique CE16 acetyl esterase from Podospora anserina active on polymeric xylan. Appl Microbiol Biotechnol. 2015;99:10515–26.
Song WX, Han XL, Qian YC, Liu GD, Yao GS, Zhong YH, Qu YB. Proteomic analysis of the biomass hydrolytic potentials of Penicillium oxalicum lignocellulolytic enzyme system. Biotechnol Biofuels. 2016;9:68.
Hervéa C, Rogowskib A, Blakea AW, Marcusa SE, Gilbertb HJ, Knoxa JP. Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects. Proc Natl Acad Sci U S A. 2010;107(34):15293–8.
Walker JA, Takasuka TE, Deng K, Bianchetti CM, Udell HS, Prom BM, Kim H, Adams PD, Northen TR, Fox BG. Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules. Biotechnol Biofuels. 2015;21(8):220.
Kim TW, Chokhawala HA, Nadler D, Blanch HW, Clark DS. Binding modules alter the activity of chimeric cellulases: effects of biomass pretreatment and enzyme source. Biotechnol Bioeng. 2010;107(4):601–11.
Telke AA, Ghatge SS, Kang SH, Thangapandian S, Lee KW, Shin HD, Um Y, Kim SW. Construction and characterization of chimeric cellulases with enhanced catalytic activity towards insoluble cellulosic substrates. Bioresour Technol. 2012;112:10–7.
Reyes-Ortiz V, Heins RA, Cheng G, Kim EY, Vernon BC, Elandt RB, Adams PD, Sale KL, Hadi MZ, Simmons BA, Kent MS, Tullman-Ercek D. Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates. Biotechnol Biofuels. 2013;6(1):93.
Inoue H, Kishishita S, Kumagai A, Kataoka M, Fujii T, Ishikawa K. Contribution of a family 1 carbohydrate-binding module in thermostable glycoside hydrolase 10 xylanase from Talaromyces cellulolyticus toward synergistic enzymatic hydrolysis of lignocellulose. Biotechnol Biofuels. 2015;8:77.
Meng DD, Ying Y, Chen XH, Lu M, Ning K, Wang LS, Li FL. Distinct roles for carbohydrate-binding modules of glycoside hydrolase 10 (GH10) and GH11 xylanases from Caldicellulosiruptor sp. strain F32 in thermostability and catalytic efficiency. Appl Environ Microbiol. 2015;81(6):2006–14.
Ding SJ, Cao J, Zhou R, Zheng F. Molecular cloning, and characterization of a modular acetyl xylan esterase from the edible straw mushroom Volvariella volvacea. FEMS Microbiol Lett. 2007;274(2):304–10.
Gunnarsson LC, Montanier C, Tunnicliffe RB, Williamson MP, Gilbert HJ, Karlsson EN, Ohlin M. Novel xylan-binding properties of an engineered family 4 carbohydrate-binding module. Biochem J. 2007;406:209–14.
Czjzek M, Bolam DN, Mosbah A, Allouch J, Fontes CM, Ferreira LM, Bornet O, Zamboni V, Darbon H, Smith NL, Black GW, Henrissat B, Gilbert HJ. The location of the ligand-binding site of carbohydrate-binding modules that have evolved from a common sequence is not conserved. J Biol Chem. 2001;276(51):48580–7.
Charnock SJ, Bolam DN, Turkenburg JP, Gilbert HJ, Ferreira LMA, Davies GJ, Fontes CMGA. The X6 “thermostabilizing” domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain. Biochemistry. 2000;39:5013–21.
Abou Hachem M, Nordberg Karlsson E, Bartonek-Roxå E, Raghothama S, Simpson PJ, Gilbert HJ, Williamson MP, Holst O. Carbohydrate-binding modules from a thermostable Rhodothermus marinus xylanase : cloning, expression and binding studies. Biochem J. 2000;345:53–60.
Fontes CMGA, Hazlewood GP, Morag E, Hall J, Hirst BH, Gilbert HJ. Evidence for a general role for non-catalytic thermostabilizing domains in xylanases from thermophilic bacteria. Biochem J. 1995;307:151–8.
Koseki T, Mochizuki K, Kisara H, Miyanaga A, Fushinobu S, Murayama T, Shiono Y. Characterization of a chimeric enzyme comprising feruloyl esterase and family 42 carbohydrate-binding module. Appl Microbiol Biotechnol. 2010;86:155–61.
Voutilainen SP, Rantala-Nurmi S, Penttilä M, Koivula A. Engineering chimeric thermostable GH7 cellobiohydrolases in Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2014;98(7):2991–3001.
Viikari L, Alapuranen M, Puranen T, Vehmaanpera J. Thermostable enzymes in lignocellulose hydrolysis. Adv Biochem Eng Biotechnol. 2007;108:121–45.
Khana MIM, Sajjada M, Sadafb S, Zafarc R, Niazid UHK, Akhtar MW. The nature of the carbohydrate binding module determines thecatalytic efficiency of xylanase Z of Clostridium thermocellum. J Biotechnol. 2013;168:403–8.
Hildén L, Daniel G, Johansson G. Use of a fluorescence labelled, carbohydrate-binding module from Phanerochaete chrysosporium Cel7D for studying wood cell wall ultrastructure. Biotechnol Lett. 2003;25:553–8.
Simpson PJ, Jamieson SJ, Hachem MA, Karlsson EN, Gilbert HJ, Holst O, Williamson MP. The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase. Biochemistry. 2002;41(18):5712–9.
McCartney L, Blake AW, Flint J, Bolam DN, Boraston AB, Gilbert HJ, Knox JP. Differential recognition of plant cell walls by microbial xylan-specific carbohydrate-binding modules. Proc Natl Acad Sci U S A. 2006;103(12):4765–70.
Mai-Gisondi G, Turunen O, Pastinen O, Pahimanolis N, Master ER. Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module. Enzyme Microb Technol. 2015;79–80:27–33.
Zheng F, Huang JX, Yin YH, Ding SJ. A novel neutral xylanase with high SDS resistance from Volvariella volvacea: characterization and its synergistic hydrolysis of wheat bran with acetyl xylan esterase. J Ind Microbiol Biotechnol. 2013;40(10):1083–93.
Selig MJ, Knoshaug EP, Adney WS, Himmel ME, Decker SR. Synergistic enhancement of cellobiohydrolase performance on pretreated corn stover by addition of xylanase and esterase activities. Bioresour Technol. 2008;99:4997–5005.
Tian B, Chen Y, Ding SJ. A combined approach for improving alkaline acetyl xylan esterase production in Pichia pastoris, and effects of glycosylation on enzyme secretion, activity and stability. Protein Expr Purif. 2012;85:44–50.
Shao WL, Wiegel J. Purification and characterization of two acetyl xylan esterases from Thermoanaerobacterium sp. strain JW/SL-YS485. Appl Environ Microbiol. 1995;61:729–33.
Wang P, Ge LH, Xia DA. Preparation of feruloylated oligosaccharides from wheat bran with xylanase hydrolysis. J Chin Cer Oils Assoc. 2008;23:152–6.
Hagglund E, Lindberg B, Mcpherson J. Dimethylsulphoxide, a solvent for hemicelluloses. Acta Chem Scand. 1956;10:1160–4.
Saarnio J, Wathen K, Gustafsson C. Structure of an acidic xylan isolated from birch wood holocellulose. Acta Chem Scand. 1954;8:825–8.
Sluiter A, Hames B, Ruiz R, Scarlata C, Sluiter J, Templeton D, Crocker D. Determination of structural carbohydrates and lignin in biomass. Golden: National Renewable Energy Laboratory. Technical Report NREL/TP-510e42618. 2008
Voragen AGJ, Schols HA, Pilnik W. Determination of the degree of methylation and acetylation of pectins by h.p.l.c. Food Hydrocoll. 1986;1:65–70.
This work was supported by a research grant (no. 31270628) from the National Natural Science Foundation of China, a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions, and the Doctorate Fellowship Foundation of Nanjing Forestry University.
Availability of data and material
The raw datasets supporting the conclusions of this article are included within the article and its additional files as.doc-files. The nucleotide sequences of cbms and V. volvacea Vvaxe1 were available in the GenBank repository (accession number CAA72323.2, AAC04579.1, AAR39814.1, and DQ888226).
SL carried out the experimental work, analyzed the results and drafted the manuscript. SD designed the study, coordinated the overall study, and helped to analyze the results and finalize the paper. All authors read and approved the final manuscript.
The authors declare that they have no competing interests.
Consent for publication
Ethics approval and consent to participate
About this article
Cite this article
Liu, S., Ding, S. Replacement of carbohydrate binding modules improves acetyl xylan esterase activity and its synergistic hydrolysis of different substrates with xylanase. BMC Biotechnol 16, 73 (2016). https://doi.org/10.1186/s12896-016-0305-6
- Acetyl xylan esterase
- Carbohydrate-binding module
- Fusion enzyme