Pathak VM, Navneet. Review on the current status of polymer degradation: a microbial approach. Bioresour Bioprocess. 2017;4:15.
Article
Google Scholar
Mohanram S, Amat D, Choudhary J, Arora A, Nain L. Novel perspectives for evolving enzyme cocktails for lignocellulose hydrolysis in biorefineries. Sustain Chem Process. 2013;1:1–12.
Article
Google Scholar
Jonathan MC, DeMartini J, Van Stigt TS, Hommes R, Kabel MA. Characterisation of non-degraded oligosaccharides in enzymatically hydrolysed and fermented, dilute ammonia-pretreated corn Stover for ethanol production. Biotech Biofuels. 2017;10:112.
Article
CAS
Google Scholar
Ahmed S, Luis AS, Bras JLA, et al. A novel α-L-arabinofuranosidase of family 43 glycoside hydrolase (Ct43Araf) from Clostridium thermocellum. PLoS One. 2013;8:9.
Google Scholar
Hatfield RD, Rancour DM, Marita JM. Grass cell walls: a story of cross linking. Front Plant Sci. 2016;7:2056.
PubMed
Google Scholar
Maruthamuthu M, van Elsas JD. Molecular cloning, expression, and characterization of four novel thermo-alkaliphilic enzymes retrieved from a metagenomic library. Biotechnol Biofuels. 2017;10:142.
Article
Google Scholar
Bouraoui H, Desrousseaux ML, Ioannou E, et al. The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolysing main-chain and side-chain glycosidic bonds in heteroxylans. Biotechnol Biofuels. 2016;9:140.
Article
Google Scholar
Turner P, Mamo G, Karlsson EN. Potential and utilization of thermophiles and thermostable enzymes in biorefining. Microb Cell Factories. 2007;6:9.
Article
Google Scholar
DeCastro ME, Rodríguez-Belmonte E, González-Siso MI. Metagenomics of thermophiles with a focus on discovery of novel thermozymes. Front Microbiol. 2016;7:1521.
Article
Google Scholar
Viikari L. Hydrolysis of amorphous and crystalline cellulose by heterologously produced cellulases of Melanocarpus albomyces. J Biotechnol. 2007;136:140–7.
Google Scholar
Karnaouri A, Matsakas L, Topakas E, Rova U, Christakopoulos P. Development of thermophilic tailor-made enzyme mixtures for the bioconversion of agricultural and forest residues. Front Microbiol. 2016;7:177.
Article
Google Scholar
Dougherty MJ, Dhaeseleer P, Hazen TC, Simmons BA, Adams PD, Hadi MZ. Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization. BMC Biotechnol. 2012;12:38.
Article
CAS
Google Scholar
Li LL, McCorkle SR, Monchy S, Taghavi S, van der Lelie D. Bioprospecting metagenomes: glycosyl hydrolases for converting biomass. Biotechnol Biofuels. 2009;2:10.
Article
Google Scholar
Ohlhoff CW, Kirby BM, van Zyl L, Mutepfa DLR, Casanueva A, Huddy RJ, et al. An unusual feruloyl esterase belonging to family VIII esterases and displaying a broad substrate range. J Mol Catal B Enzym. 2015;118:79–88.
Article
CAS
Google Scholar
Smart M, Huddy RJ, Cowan DA, Tuffin M. Liquid phase multiplex high-throughput screening of metagenomics libraries using p-Nitrophenyl-linked substrates for accessory lignocellulosic enzymes. Methods Mol Biol. 2017;1539:219–28.
Article
CAS
Google Scholar
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403–10.
Article
CAS
Google Scholar
Besemer J, Borodovsky M. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 2005;33:W451–4.
Article
CAS
Google Scholar
Jones P, Binns D, Chang H-U, Fraser M, Li W, McAnulla C, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014;30:1236–40.
Article
CAS
Google Scholar
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248–54.
Article
CAS
Google Scholar
Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970;227:680–5.
Article
CAS
Google Scholar
Miller GL. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem. 1959;31:426–8.
Article
CAS
Google Scholar
Martins LF, Antunes LP, Pascon RC, de Oliveira JCF, Digiampietri LA, et al. Metagenomic analysis of a tropical composting operation at the São Paulo zoo park reveals diversity of biomass degradation functions and organisms. PLoS One. 2013;8:10.
Article
Google Scholar
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S. Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel. 2004;17:349–56.
Article
CAS
Google Scholar
Kolinko S, Wu Y-W, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW. A bacterial pioneer produces cellulase complexes that persist through community succession. Nat Microbiol. 2018;3:99–107.
Article
CAS
Google Scholar
Hövel K, Shallom D, Niefind K, Belakhov V, Shoham G, Baasov T, Shoham Y, Schomburg D. Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase. EMBO J. 2003;22:4922–32.
Article
Google Scholar
Souza TACB, Santos CR, Souza AR, Oldiges DP, Ruller R, Prade RA, Squina FM, Murakami MT. Structure of a novel thermostable GH51 α-Larabinofuranosidase from Thermotoga petrophila RKU-1. Protein Sci. 2011;20:1632–7.
Article
CAS
Google Scholar
Inacio JM, Correia IL, de Sá-Nogueira I. Two distinct arabinofuranosidases contribute to arabino-oligosaccharide degradation in Bacillus subtilis. Microbiology. 2008;154:2719–29.
Article
CAS
Google Scholar
Hoffman ZB, Oliveira LC, Cota J, Alvarez TM, Diogo JA, Neto MDO, Citadini APS, Leite VBP, Squina FM, Murakami MT, Ruller R. Characterization of a hexameric exo-acting GH51 α-L-arabinofuranosidase from the mesophilic Bacillus subtilis. Mol Biotechnol. 2013;55:260–7.
Article
Google Scholar
Shi P, Li N, Yang P, Wang Y, Luo H, Bai Y, Yao B. Gene cloning, expression, and characterization of a family 51 alpha-L-arabinofuranosidase from Streptomyces sp. S9. Appl Biochem Biotechnol. 2010;162:707–18.
Article
CAS
Google Scholar
Canakci S, Belduz A, Saha BC, Yasar A, Ayaz FA, Yayli N. Purification and characterization of a highly thermostable alpha-L-arabinofuranosidase from Geobacillus caldoxylolyticus TK4. Appl Microbiol Biotechnol. 2007;75:813–20.
Article
CAS
Google Scholar
Canakci S, Kacagan M, Inan K, Belduz AO, Saha BC. Cloning, purification, and characterization of a thermostable α-L arabinofuranosidase from Anoxybacillus kestanbolensis AC26Sari. Appl Microbiol Biotechnol. 2008;81:61–8.
Article
CAS
Google Scholar
Goyal S, Dhull SK, Kapoor KK. Chemical and biological changes during composting of different organic wastes and assessment of compost maturity. Bioresour Technol. 2005;96:1584–91.
Article
CAS
Google Scholar
Sundberg C, Smars S, Jonsson H. Low pH as an inhibiting factor in the transition from mesophilic to thermophilic phase in composting. Bioresour Technol. 2004;95:145–50.
Article
CAS
Google Scholar
Wagschal K, Heng C, Lee CC, Wong DWS. Biochemical characterization of a novel dual-function arabinofuranosidase/xylosidase isolated from a compost starter mixture. App Microbiol Biotechnol. 2009;(5):855–63.
Article
Google Scholar
Deb P, Talukdar SA, Mohsina K, Sarker PK, Sayem SMA. Production and partial characterization of extracellular amylase enzyme from Bacillus amyloliquefaciens P-001. Springer Plus. 2013;2:154.
Article
Google Scholar
Zhang T, Liang J, Wang P, Xu Y, Wang Y, Wei X, Fan M. Purification and characterization of a novel phloretin-2′-O-glycosyltransferase favouring phloridzin biosynthesis. Sci Rep. 2016;6:35274.
Article
CAS
Google Scholar
Yildirim V, Baltaci MO, Ozgencli I, Sisecioglu M, Adiguzel A, Adiguzel G. Purification and biochemical characterization of a novel thermostable serine alkaline protease from Aeribacillus pallidus C10: a potential additive for detergents. J Enz Inhib Med Chem. 2017;32:468–77.
Article
CAS
Google Scholar
Scapin SMN, Souza FHM, Zanphorlin LM, de Almeida TS, Sade YB, Cardoso AM, et al. Structure and function of a novel GH8 endoglucanase from the bacterial cellulose synthase complex of Raoultella ornithinolytica. PLoS One. 2017;12:e0176550.
Article
Google Scholar
Sterner R, Kleemann GR, Szadkowski H, Lustig A, Hennig M, Kirschner K. Phosphoribosyl anthranilate isomerase from Thermotoga maritima is an extremely stable and active homodimer. Protein Sci. 1996;5:2000–8.
Article
CAS
Google Scholar
Ichikawa JK, Clarke S. A highly active protein repair enzyme from an extreme thermophile: the Lisoaspartyl methyltransferase from Thermotoga maritima. Arch Biochem Biophys. 1998;358:222–31.
Article
CAS
Google Scholar
Merz A, Knöchel T, Jansonius JN, Kirschner K. The hyperthermostable indoleglycerol phosphate synthase from Thermotoga maritima is destabilized by mutational disruption of two solvent-exposed salt bridges. J Mol Biol. 1999;288:753–63.
Article
CAS
Google Scholar
Miyazaki K. Hyperthermophilic a-L-arabinofuranosidase from Thermotoga maritima MSB8: molecular cloning, gene expression, and characterization of the recombinant protein. Extremophiles. 2005;9:399–406.
Article
CAS
Google Scholar
Peterson ME, Daniel RM, Danson MJ, Eisenthal R. The dependence of enzyme activity on temperature: determination and validation of parameters. Biochem J. 2007;402:331–7.
Article
CAS
Google Scholar
Pollo SMJ, Zhaxybayeva O, Nesbø CL. Insights into thermoadaptation and the evolution of mesophily from the bacterial phylum Thermotogae. Can J Microbiol. 2015;61:655–70.
Article
CAS
Google Scholar
Taylor TJ, Vaisman II. Discrimination of thermophilic and mesophilic proteins. BMC Struct Biol. 2010;10:1–10.
Article
Google Scholar
Zeigler DR. The Geobacillus paradox: why is a thermophilic bacterial genus so prevalent on a mesophilic planet? Microbiol. 2014;160:1–11.
Article
CAS
Google Scholar
Dumbrepatil A, Park J, Jung TY, Song H, Jang M, Han N, Kim T, Woo E. Structural analysis of α-Larabinofuranosidase from Thermotoga maritima reveals characteristics for thermostability and substrate specificity. J Microbiol Biotechnol. 2012;22:1724–30.
Article
CAS
Google Scholar
Nurcholis M, Nurhayati N, Helianti I, Ulfah M, Wahyuntari B, Wardani AK. Cloning of α-Larabinofuranosidase genes and its expression in Escherichia coli: a comparative study of recombinant arabinofuranosidase originating in Bacillus subtilis DB104 and newly isolated Bacillus licheniformis CW1. Microbiol Indones. 2012;6:1–8.
Article
Google Scholar
Shi P, Chen X, Meng K, Huang H, Bai Y, Luo H, Yang P, Yao B. Distinct actions by Paenibacillus sp. strain E18 α-L-arabinofuranosidases and xylanase in xylan degradation. Appl Environ Microbiol. 2013;79:1990–5.
Article
CAS
Google Scholar
Patel H, Chapla D, Divecha J, Shah A. Improved yield of α-Larabinofuranosidase by newly isolated Aspergillus niger ADH-11 and synergistic effect of crude enzyme on saccharification of maize Stover. Bioresour Bioprocess. 2015;2:11.
Article
Google Scholar
Wilkens C, Andersen S, Dumon C, Berrin JG, Svensson B. GH62 arabinofuranosidases: structure, function and applications. Biotechnol Adv. 2017;35:792–804.
Article
CAS
Google Scholar
Zhou J, Bao L, Chang L, Zhou Y, Lu H. Biochemical and kinetic characterization of GH43 β-D: - xylosidase/α-L: -arabinofuranosidase and GH30 α-L-arabinofuranosidase/ β-D-xylosidase from rumen metagenome. J Industrial Microbiol Biotechnol. 2012;39:143–52.
Article
CAS
Google Scholar
McKee LS, Pena MJ, Rogowski A, Jackson A, Lewis RJ, York WS, Krogh KBRM, Vikso-Nielsen A, Skjot M, Gilbert HJ, Marles-Wright J. Introducing endoxylanase activity into an exo-acting arabinofuranosidase that targets side chains. Proc Natl Acad Sci U S A. 2012;109:6537–42.
Article
CAS
Google Scholar
Fritz M, Ravanal MC, Braet C, Eyzaguirre J. A family 51 alpha-larabinofuranosidase from Penicillium purpurogenum: purification, properties and amino acid sequence. Mycol Res. 2008;112:933–42.
Article
CAS
Google Scholar
Yan Q, Tang L, Yang S, Zhou P, Zhang S, Jiang Z. Purification and characterization of a novel thermostable α-L-arabinofuranosidase (α-LAFase) from Chaetomium sp. Process Biochem. 2012;47:472–8.
Article
CAS
Google Scholar
Cartmell A, Mckee LS, Pen MJ, Larsbrink J, Brumer H, Kaneko S, Ichinose H, Lewis RJ, Vikso-Nielsen A, Gilbert HJ, Marles-Wright J. The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases. J BiolChem. 2011;286:15483–51495.
CAS
Google Scholar
Paës G, Skov LK, O'Donohue MJ, Rémond C, Kastrup JS, Gajhede M, Mirza O. The structure of the complex between a branched pentasaccharide and Thermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit. Biochemistry. 2008;47:7441–51.
Article
Google Scholar
Caffall KH, Mohnen D. The structure, function, and biosynthesis of plant cell wall pectic polysaccharides. Carbohydr Res. 2009;344:1879–900.
Article
CAS
Google Scholar
Saha BC. Alpha-l-arabinofuranosidases: biochemistry, molecular biology and application in biotechnology. Biotechnol Adv. 2000;18:403–23.
Article
CAS
Google Scholar
Lim YR, Yoon RY, Seo ES, Kim YS, Park SC, Oh DK. Hydrolytic properties of a thermostable a-Larabinofuranosidase from Caldicellulosiruptor saccharolyticus. J Appl Microbiol. 2010;109:1188–97.
Article
CAS
Google Scholar
Tuffin M, Anderson D, Heath C, Cowan DA. Metagenomic gene discovery: how have we moved into novel sequence space? Biotechnol J. 2009;4:1671–83.
Article
CAS
Google Scholar
Ohta K, Fujii S, Higashida C. Characterization of a glycoside hydrolase family-51 α-larabinofuranosidase gene from Aureobasidium pullulans ATCC 20524 and its encoded product. J Biosci Bioeng. 2013;116:287–92.
Article
CAS
Google Scholar