Continuous enhancement of iturin A production by Bacillus subtilis with a stepwise two-stage glucose feeding strategy
© Jin et al. 2015
Received: 21 August 2014
Accepted: 21 May 2015
Published: 9 June 2015
The lipopeptide antibiotic iturin A is an attractive biopesticide with the potential to replace chemical-based pesticides for controlling plant pathogens. However, its industrial fermentation has not been realized due to the high production costs and low product concentrations. This study aims to enhance iturin A production by performing a novel fermentation process with effective glucose feeding control using rapeseed meal as a low-cost nitrogen source.
We demonstrated that continuous and significant enhancement of iturin A production could be achieved by a novel two-stage glucose-feeding strategy with a stepwise decrease in feeding rate. Using this strategy, the ratio of spores to total cells could be maintained at a desirable/stable level of 0.80–0.86, and the reducing sugar concentration could be controlled at a low level of 2–3 g/L so that optimal substrate balance could be maintained throughout the feeding phase. As a result, the maximum iturin A concentration reached 1.12 g/L, which was two-fold higher than that of batch culture.
This is the first report which uses control of the glucose supply to improve iturin A production by fed-batch fermentation and identifies some important factors necessary to realize industrial iturin A production. This approach may also enhance the production of other useful secondary metabolites by Bacillus subtilis.
KeywordsBacillus subtilis Iturin A Lipopeptide Rapeseed meal Fed-batch fermentation
Concerns regarding a healthy food supply and pesticide resistance in commercial crops have encouraged the development of biological control methods to replace the extensive use of chemical-based pesticides, thereby achieving safer and more effective pest and disease control [1, 2]. Biological control is the use of natural antagonistic organisms to combat pests or suppress plant diseases . Bacillus subtilis, one of the most commonly used and well-studied microbial species, has the potential to produce more than two dozens of structurally diverse broad spectrum antimicrobial compounds with high viability . Among these antimicrobial compounds, cyclic lipopeptides of the iturin, surfactin and fengycin families have well-recognized potential uses in biotechnology and biopharmaceutical applications because of their excellent surfactant properties.
Iturin A is a cyclic lipopeptide antibiotic consisting of a cyclic heptapeptide linked to a 14–17 carbons β-amino fatty-acid chain . This special amphipathic structure endows iturin A with strong broad-spectrum antifungal activity so that it could be used as a potential bio-control agent against harmful plant pathogens that cause crop diseases [6, 7]. Lipopeptide antibiotics have great commercial, therapeutic and environmental application potentials. However, the production of lipopeptide antibiotics including iturin A on an industrial scale has not been realized, due to the high production costs and low product yields . In general, the raw material costs account for 30–40 % of the total production costs in most biotechnological processes . Hence using low cost raw materials from abundant sources may be an important aspect to improve the economic viability of industrial lipopeptide production. Recently, a wide variety of those raw materials including agro-based byproducts [10–12] and industrial wastes [13–15] have been used as substrates for iturin A or surfactant production. In addition to reducing production costs, many studies have also been carried out to improve product yields/concentrations by optimizing cultivation conditions or screening for overproducing mutants or creating recombinant strains [16, 17]. An efficient bioprocess with low production costs and high yield is extremely important for cost-effective commercial production of lipopeptide antibiotics .
Secondary metabolites including iturin A are generally produced after the logarithmic cell growth phase when one or more essential nutrients become deficient . In addition, lipopeptide antibiotics synthesis is regulated by mechanisms associated with starvation-induced systems such as sporulation . Sporulation of B. subtilis is a natural phenomenon which occurs in response to starvation, however the complete transformation of metabolically active cells to spores will eventually terminate the production of lipopeptides . It has been suggested that the second stage production of iturin A could be induced by the germination of spores through heat-activation and nutrient supplementation . Thus, the nutrient supply is necessary for reproduction of iturin A by activating/recovering spores into metabolically active cells. The nutrient supply should be strictly controlled, as excessive nutrients in the culture broth would lead to a high B. subtilis growth but cessation of iturin A production . Because of the complex correlations between iturin A production and the sporulation/nutrient requirement characteristics of B. subtilis, it is critical that a limited nutrient supply should be used in order to recover the optimal number of metabolically active cells. To date, improving iturin A production by manipulation of the nutrient supply in fed-batch fermentation has seldom been reported.
In our previous study, the feasibility and effectiveness of directly utilizing rapeseed meal as an easily obtainable, low cost, nitrogen-rich substrate for iturin A production, were testified in submerged batch fermentation . In the present study, we attempted to further improve the iturin A yield by effectively supplementing glucose in fed-batch fermentation. Firstly, we determined the optimal starting feeding time in flask fermentations with pulsed substrate feeding. Subsequently, the characteristics of iturin A production, glucose consumption and spores formation with different glucose feeding rates in fed-batch fermentations were investigated and evaluated in a bioreactor. Finally, a novel two-stage stepwise decreased glucose feeding strategy was proposed for efficient iturin A production.
Results and discussion
Iturin A production by Bacillus subtilis in shake flask batch cultivation
Fed-batch fermentation by pulsed substrate feeding in flasks
The production of secondary metabolites such as iturin A is closely related to the nutrient supply. Iturin A was largely produced after the exponential growth phase when nutrients were near deficient . However, the complete depletion of one or more essential nutrients usually results in spores formation from metabolically active vegetative cells and eventually iturin A production ceases . Fig. 1 demonstrates that iturin A production ceased and then began to decrease when the metabolically active vegetative cells were completely transformed into spores under substrate exhaustion conditions. Moreover, the reducing sugar concentration remained almost constant after 35 h.
Fed-batch fermentation with constant glucose-feeding rates in a 7-L bioreactor
In the flask-based experiments, iturin A production could be enhanced continuously and the iturin A production period could be prolonged effectively by pulsed glucose feeding (Fig. 2). In this case, all of the glucose added was completely consumed, but the sudden change in glucose concentration during the pulsed glucose feeding could deteriorate iturin A production. To eliminate the large environmental changes due to the pulsed glucose addition and to further improve iturin A production, a constant glucose feeding strategy was considered and fermentations with three different constant glucose feeding rates were conducted. Based on the results of the flask experiments, glucose constant feeding was initiated at 48 h for the three batches.
As shown in Fig. 3b, when the glucose feeding rate was controlled at a low level of 0.28 g/L/h, the added glucose was quickly consumed and no reducing sugar accumulation was observed throughout the feeding period. With this feeding rate, the maximum iturin A concentration reached 0.62 g/L, an increase of 12.3 % compared with batch fermentation (0.57 g/L). On the other hand, spores formation could not be reduced and a continuous increase in the spores to total cells ratio could not be controlled with this low glucose feeding rate (Fig. 3b). A significant increase in iturin A production could be achieved if the glucose feeding rate was raised to a moderate level of 0.56 g/L/h, as shown in Fig. 3c. In this case, the maximum iturin A concentration of 0.78 g/L was obtained at 82 h, which was 36.8 % higher than that of the batch run. Furthermore, with this feeding rate, the spores to total cells ratio could at least be maintained at about 0.80 for a period of 30 h. This observation indicates that the ability of B. subtilis to utilize glucose changed throughout the feeding period (Fig. 3). During the early stage (50–80 h), reducing sugar concentration could be maintained at a stable and lower level of 3–4 g/L, indicating that B. subtilis had an elevated ability to utilize glucose. After 80 h, the ability of cells to utilize glucose gradually reduced, leading to a continuous increase in reducing sugar concentration and severe reducing sugar accumulation of up to 12 g/L at the end of fermentation. As a result, the concentration of iturin A decreased correspondingly, and the spores to total cells ratio began to rise and was out of control (Fig. 3c). The fermentation performance was examined again when the glucose feeding rate was raised to a further higher level (1.12 g/L/h). In this case, the spores to total cells ratio quickly decreased from 0.8 to 0.7 and then remained at this level for the first 10 h after feeding, suggesting that high glucose feeding rate activated the germination of spores to metabolically active vegetative cells. However, the rapid glucose utilization period (50–60 h) could only be sustained for a short time. Glucose then began to accumulate quickly to a level of up to 20 g/L at 76 h (Fig. 3d). Glucose accumulation resulted in reduced iturin A production and a gradual rise in spores to total cells ratio. The highest iturin A concentration remained at a low level of 0.5 g/L.
Changing patterns of dissolved oxygen and pH in batch and fed-batch fermentations with different feeding rates
Enhanced iturin A production with a two-stage glucose feeding strategy by a stepwise decrease in feeding rate
Fermentation performance comparison using different feeding strategies
Comparison of major fermentation performance index with different fermentation strategies
Iturin A concentration at 72 h (g/L)
Maximum Iturin A conc. (g/L) & time
Maximum total cell number (CFU/mL)
Ratio of spores to total cells after 48 h
Iturin A productivity at 72 h (g/L/h)
0.57 (72 h)
1.3 × 1010
Low feeding rate (F = 0.28 g/L/h)
0.64 (83 h)
1.7 × 1010
Moderate feeding rate (F = 0.56 g/L/h)
0.78 (84 h)
1.4 × 1010
High feeding rate (F = 1.12 g/L/h)
0.53 (70 h)
1.6 × 1010
Two-stage feeding strategy (F = 0.56 → F = 0.28 g/L/h)
1.12 (110 h)
1.4 × 1010
For industrial-scale iturin A production, the optimization of initial fermentation conditions and medium components in flasks are usually the first and necessary steps once an iturin A over-producing B. subtilis strain has been selected. Response surface methodology (RSM) has been commonly used as a tool to identify optimal fermentation conditions for iturin A production [21, 22]. However, after obtaining the optimal initial fermentation conditions (including medium components and environmental conditions), effective control of the fermentation process to realize a high and stable yield in bioreactor is essential. From the point of view of process control, our current study focused on further improving iturin A production by altering glucose feeding based on the iturin A production, cell growth and glucose consumption characteristics. Our investigation proved the effectiveness of a two-stage glucose feeding strategy for continuous improvement of iturin A production.
In the present study, a two-stage glucose-feeding strategy by stepwise decrease in feeding rate was proposed to adaptively respond to variation in glucose consumption rate throughout the feeding phase. With the proposed feeding strategy, the spores to total cells ratio could be maintained at the desirable/stable level of 0.80–0.86, glucose deficiency and over-accumulation could be avoided simultaneously. As a result, the highest iturin A concentration reached 1.12 g/L, which was two-fold higher than that of batch culture. The proposed control strategy could also have future potential application in enhancing the production of other secondary metabolites by Bacillus subtilis.
The iturin A production strain of Bacillus subtilis 3–10 (GeneBank accession number JF460845), was isolated from a soil sample collected from a field in a suburb of Wuhan.
The LB medium used for seed culture had the following composition (in g/L, unless otherwise specified): tryptone 10, yeast extract 5, NaCl 10. In addition, 20 g/L agar was added to the slant medium. The fermentation medium was composed of (in g/L) glucose 20, K2HPO4•3H2O 1, MgSO4•7H2O 0.5, MnSO4•H2O 0.005, and rapeseed meal 90. The initial pH of the medium was adjusted to 7.0 and autoclaved at 121 °C for 30 min. The feeding medium for fed-batch experiments was composed of 500 g/L glucose.
For seed preparation, Bacillus subtilis 3–10 from a fresh slant was inoculated into 30 mL seed medium in 250 mL flasks and cultivated in a rotary shaker at 220 rpm for 12 h. Bioreactor experiments were performed in a 7 L bench-scaled bioreactor (BIOSTAT® A Plus, Sartorius Stedim Biotech, Germany) with the initial working volume of 3 L. The inoculation size was 2 % (v/v). The feeding speeds of glucose for fed-batch cultures were controlled via a speed-adjustable peristaltic pump (Longer Pump Co., China). All fermentations were carried out at 28 °C and pH was maintained automatically at 7.0 by the addition of 4 M NaOH or 4 M H2SO4 solutions. Aeration and agitation rates were controlled at 2 vvm and 600 rpm, respectively. During the fermentations, samples were taken at 4–12 h intervals for off-line analysis.
Determination of total cells and spores number
The number of total cells (including active vegetative cells and spores) during submerged fermentation was determined as follows: 0.5 mL of sample was taken into a sterile 10 mL test tube, and mixed with 4.5 mL of sterile distilled water and shaken at 150 rpm using a vortex for 5 min at room temperature. Then, the mixture was serially diluted and spread onto LB-agar plates. After 24 h of incubation at 28 °C, the number of colonies was counted and expressed as colony forming units (CFU). For determination of the spores number, the above serially diluted mixture was further heat-treated at 80 °C for 15 min to kill the vegetative cells in the diluted sample and then the same procedure for colony counting was applied .
Extraction and quantitation of iturin A
Iturin A was extracted according to the reported method  with some modifications: 300 μL of strain 3–10 culture was suspended in a microtube containing 1200 μL methanol and then the mixture was shaken at room temperature for 60 min. The mixture was centrifuged at 12,000 rpm for 20 min, and the supernatant was filtered through a 0.22-μm pore-size hydrophobic polytetrafluoroethylene (PTFE) syringe filter unit. The iturin A concentration in the filtrate was quantified with a Waters 2695 HPLC system equipped with a reverse-phase HPLC column (ACQUITY UPLC BEA C18 1.7 μm 2.1 × 100 mm, Waters, USA) at a flow rate of 0.3 mL/min. A mixture of acetonitrile and 10 mM ammonium acetate (35:65, v/v) was used as the eluent and the elution was monitored at 210 nm. Iturin A standard (Sigma Chemicals, St. Louis, MO) was used to determine the calibration line. The contents of iturin A and measurement deviation at different sampling times were determined using triplicate samples.
Measurement of reducing sugar concentrations
The fermentation samples were centrifuged at 12,000 rpm for 20 min, and the supernatant was used for measuring reducing sugar and soluble protein concentrations. The reducing sugar concentrations were determined by the DNS method using 3, 5-dinitrosalicylic acid reagent .
This work was supported by the National Natural Science Foundation of China (No. 31201461), National High-tech R&D Program of China (863 Program, No. 2011AA100904), National Key Technology Research and Development Program (No. 2012BAD49G00), and Director Fund of Oil Crops Research Institute (No. 1610172014006, 1610172013005). The authors would like to thank these organizations for financial support.
- Fravel DR. Commercialization and implementation of biocontrol. In: Annual review of phytopathology. 43rd ed. Palo Alto: Annual Reviews; 2005. p. 337–59.Google Scholar
- Perez-Garcia A, Romero D, de Vicente A. Plant protection and growth stimulation by microorganisms: biotechnological applications of Bacilli in agriculture. Curr Opin Biotechnol. 2011;22:187–93.View ArticleGoogle Scholar
- Droby S, Wisniewski M, Macarisin D, Wilson C. Twenty years of postharvest biocontrol research: Is it time for a new paradigm? Postharvest Biol Technol. 2009;52:137–45.View ArticleGoogle Scholar
- Stein T. Bacillus subtilis antibiotics: structures, syntheses and specific functions. Mol Microbiol. 2005;56:845–57.View ArticleGoogle Scholar
- Ongena M, Jacques P. Bacillus lipopeptides: versatile weapons for plant disease biocontrol. Trends Microbiol. 2008;16:115–25.View ArticleGoogle Scholar
- Bonmatin JM, Laprevote O, Peypoux F. Diversity among microbial cyclic lipopeptides: Iturins and surfactins. Activity-structure relationships to design new bioactive agents. Comb Chem High Throughput Screen. 2003;6:541–56.View ArticleGoogle Scholar
- Peng WJ, Zhong J, Yang J, Ren YL, Xu T, Xiao S, et al. The artificial neural network approach based on uniform design to optimize the fed-batch fermentation condition: application to the production of iturin A. Microb Cell Fact. 2014;13:10.View ArticleGoogle Scholar
- Das P, Mukherjee S, Sen R. Genetic regulations of the biosynthesis of microbial surfactants: An overview. Biotechnol Genet Eng Rev. 2008;25:165–85.View ArticleGoogle Scholar
- Jain RM, Mody K, Joshi N, Mishra A, Jha B. Effect of unconventional carbon sources on biosurfactant production and its application in bioremediation. Int J Biol Macromol. 2013;62:52–8.View ArticleGoogle Scholar
- Mizumoto S, Hirai M, Shoda M. Production of lipopeptide antibiotic iturin A using soybean curd residue cultivated with Bacillus subtilis in solid-state fermentation. Appl Microbiol Biot. 2006;72:869–75.View ArticleGoogle Scholar
- Wang QJ, Chen SW, Zhang JB, Sun M, Liu ZD, Yu ZI. Co-producing lipopeptides and poly-gamma-glutamic acid by solid-state fermentation of Bacillus subtilis using soybean and sweet potato residues and its bliocontrol and fertilizer synergistic effects. Bioresour Technol. 2008;99:3318–23.View ArticleGoogle Scholar
- Makkar R, Cameotra S, Banat I. Advances in utilization of renewable substrates for biosurfactant production. AMB Expr. 2011;1:1–19.View ArticleGoogle Scholar
- Jung J, Yu KO, Ramzi AB, Choe SH, Kim SW, Han SO. Improvement of surfactin production in Bacillus subtilis using synthetic wastewater by overexpression of specific extracellular signaling peptides, comX and phrC. Biotechnol Bioeng. 2012;109:2349–56.View ArticleGoogle Scholar
- Lee SC, Lee SJ, Kim SH, Park IH, Lee YS, Chung SY, et al. Characterization of new biosurfactant produced by Klebsiella sp Y6-1 isolated from waste soybean oil. Bioresour Technol. 2008;99:2288–92.View ArticleGoogle Scholar
- Nitschke M, Pastore GM. Production and properties of a surfactant obtained from Bacillus subtilis grown on cassava wastewater. Bioresour Technol. 2006;97:336–41.View ArticleGoogle Scholar
- de Bruijn I, Raaijmakers JM. Regulation of cyclic lipopeptide biosynthesis in Pseudomonas fluorescens by the ClpP protease. J Bacteriol. 2009;191:1910–23.View ArticleGoogle Scholar
- Leaes FL, Velho RV, Caldas DGG, Pinto JV, Tsai SM, Brandelli A. Influence of pH and temperature on the expression of sboA and ituD genes in Bacillus sp P11. Antonie Van Leeuwenhoek. 2013;104:149–54.View ArticleGoogle Scholar
- Marahiel MA, Nakano MM, Zuber P. Regulation of peptide antibiotic production in Bacillus. Mol Microbiol. 1993;7:631–6.View ArticleGoogle Scholar
- Rahman MS, Ano T, Shoda M. Second stage production of iturin A by induced germination of Bacillus subtilis RB14. J Biotechnol. 2006;125:513–5.View ArticleGoogle Scholar
- Jin H, Zhang XR, Li KP, Niu YX, Guo M, Hu CJ, et al. Direct bio-utilization of untreated rapeseed meal for effective iturin A production by Bacillus subtilis in submerged fermentation. PLoS One. 2014;9:7.View ArticleGoogle Scholar
- Zhao X, Han Y, Tan XQ, Wang J, Zhou ZJ. Optimization of antifungal lipopeptide production from Bacillus sp BH072 by response surface methodology. J Microbiol. 2014;52:324–32.View ArticleGoogle Scholar
- Mizumoto S, Shoda M. Medium optimization of antifungal lipopeptide, iturin A, production by Bacillus subtilis in solid-state fermentation by response surface methodology. Appl Microbiol Biot. 2007;76:101–8.View ArticleGoogle Scholar
- Miller GL. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem. 1959;31:426–8.View ArticleGoogle Scholar
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