- Research article
- Open Access
Active fungal GH115 α-glucuronidase produced in Arabidopsis thaliana affects only the UX1-reactive glucuronate decorations on native glucuronoxylans
BMC Biotechnology volume 15, Article number: 56 (2015)
Expressing microbial polysaccharide-modifying enzymes in plants is an attractive approach to custom tailor plant lignocellulose and to study the importance of wall structures to plant development. Expression of α-glucuronidases in plants to modify the structures of glucuronoxylans has not been yet attempted. Glycoside hydrolase (GH) family 115 α-glucuronidases cleave the internal α-D-(4-O-methyl)glucopyranosyluronic acid ((Me)GlcA) from xylans or xylooligosaccharides. In this work, a GH115 α-glucuronidase from Schizophyllum commune, ScAGU115, was expressed in Arabidopsis thaliana and targeted to apoplast. The transgene effects on native xylans’ structures, plant development, and lignocellulose saccharification were evaluated and compared to those of knocked out glucuronyltransferases AtGUX1 and AtGUX2.
The ScAGU115 extracted from cell walls of Arabidopsis was active on the internally substituted aldopentaouronic acid (XUXX). The transgenic plants did not show any change in growth or in lignocellulose saccharification. The cell wall (Me)GlcA and other non-cellulosic sugars, as well as the lignin content, remained unchanged. In contrast, the gux1gux2 double mutant showed a 70% decrease in (Me)GlcA to xylose molar ratio, and, interestingly, a 60% increase in the xylose content. Whereas ScAGU115-expressing plants exhibited a decreased signal in native secondary walls from the monoclonal antibody UX1 that recognizes (Me)GlcA on non-acetylated xylan, the signal was not affected after wall deacetylation. In contrast, gux1gux2 mutant was lacking UX1 signals in both native and deacetylated cell walls. This indicates that acetyl substitution on the xylopyranosyl residue carrying (Me)GlcA or on the neighboring xylopyranosyl residues may restrict post-synthetic modification of xylans by ScAGU115 in planta.
Active GH115 α-glucuronidase has been produced for the first time in plants. The cell wall–targeted ScAGU115 was shown to affect those glucuronate substitutions of xylan, which are accessible to UX1 antibody and constitute a small fraction in Arabidopsis, whereas majority of (Me)GlcA substitutions were resistant, most likely due to the shielding by acetyl groups. Plants expressing ScAGU115 did not show any defects under laboratory conditions indicating that the UX1 epitope of xylan is not essential under these conditions. Moreover the removal of the UX1 xylan epitope does not affect lignocellulose saccharification.
The foreseeable shortage of fossil fuels has driven the search for alternative supplies for energy and plastics. Plant biomass, as a renewable natural resource, has the potential to become a feedstock for conversion into fuels, chemicals, and materials. However, harnessing the benefits from the structurally complex plant cell walls remains a major challenge [1,2]. Secondary cell walls, the major component of plant biomass, are primarily composed of cellulose microfibrils embedded in a matrix of hemicelluloses and lignin . The interplay between the biomolecules [4,5] determines the strength of the lignocellulose that inherently contributes to recalcitrance against deliberate extraction or enzymatic hydrolysis .
O-acetylglucuronoxylans (AcGXs) are the most abundant hemicelluloses present in the secondary wall of dicots . The backbones of AcGXs are formed by (1 → 4)-linked β-D-xylopyranosyl (Xyl) units and are substituted by (1 → 2)-linked α-D-(4-O-methyl)glucopyranosyluronic acid ((Me)GlcA) units every 4-16 Xyl residues . The AcGXs are also highly substituted by acetyl residues at the 2-O and/or 3-O position of the Xyl units [8-13]. More complex substitutions at AcGXs in dicots are uncommon but may exist, such as an α-D-galactopyranosyl (1 → 2)-linked to MeGlcA found in eucalyptus . AcGXs may also associate with lignin through ester, ether, or glycosidic bonds [15,16].
Cell wall modification via in planta engineering can be utilized to design cell wall constituents with increased fermentable sugars, polymer extractability, or to tailor other lignocellulose properties [1,2]. This goal is approachable either by manipulating endogenous biosynthetic genes or by expressing microbial polysaccharides-modifying enzymes in plants. Although mutating the endogenous genes related to the xylan backbone [17-19] or the reducing end sequence synthesis [20-22] has impaired plant growth, partially disrupting the side groups, for example, (Me)GlcA [23,24] or O-acetylation [25,26], did not seem to affect the fitness of the plant. This tolerance of plants to an altered polymer structure is exemplified by the double knockout of two glucuronosyltrasferases (GlcATs), GUX1 and GUX2, in Arabidopsis, resulting in an almost complete lack of (Me)GlcA substitution in the AcGXs, without affecting the growth of the mutants. Xylan extraction, however, was enhanced in the gux1gux2 mutants .
In planta expression of a microbial enzyme offers two advantages. The exogenous enzymes can be chosen to target specific linkages in wall polysaccharides, thus affecting polymer properties in a controlled manner. It can also offer a cost-saving strategy for producing and storing lignocellulolytic enzymes in plants [27-32]. Endo-1,4-β-xylanases (EC 184.108.40.206) are the dominant enzymes that cleave the backbone of AcGXs, while α-glucuronidases (EC 220.127.116.11) and acetyl xylan esterases (EC 18.104.22.168) are the accessory enzymes that remove the (Me)GlcA and acetyl residues, respectively. Several cases have reported the expression of endoxylanases in plants, either as cell wall targeted [28-30] or intracellular enzymes [27,29,31]. Xylans were solubilized better in endoxylanase-expressing plants indicating a potential route for the enhanced extractability of xylans and improved saccharification .
Expression of side group–modifying enzymes such as the Aspergillus nidulans acetyl xylan esterase (AnAXE), feruloyl esterase (AnFAE), α-arabinofuranosidase/β-xylosidase (AnXA), and the Xanthomonas oryzae α-arabinofuranosidase (XoAF) in Arabidopsis [33,34] has been successful without harming plant growth. Whereas, the expression of Phanerochaete carnosa glucuronyl esterase (PcGCE) in Arabidopsis  and aspen  induced morphological changes. Cell wall digestibility was mildly improved in AnFAE-, AnXA-, XoAF and PcGCE-expressing plants, but not in AnAXE-expressing plants although the acetyl content was moderately decreased. As acetylation affects association between xylan chains as well as adsorption to cellulose fibrils, deacetylation may result in tighter interactions of the xylan chains and cellulose in the cell wall, and thus limit the digestibility.
In planta expression of the α-glucuronidase targeting the α(1 → 2)-linkage between (Me)GlcA residue and the AcGX backbone has not been attempted. Two glycoside hydrolase families, that is, GH67 and GH115, harbor α-glucuronidases that act either uniquely on the terminal (nonreducing end) or on the internal and terminal (Me)GlcA, respectively (Figure 1) [37-40]. GH115 α-glucuronidase from the white rot fungus Schizophyllum commune is known to be active on xylan polymers , and its gene sequence has been recently unveiled . In this report, we show that the S. commune GH115 α-glucuronidase, codon optimized for expression in plants, can be produced in Arabidopsis as an active enzyme. Biochemical analyses of the overexpressors’ cell walls showed that the in muro AcGXs, however, were largely immune to the expressed enzyme.
Generation of transgenic arabidopsis lines expressing the ScAGU115 α-glucuronidase in cell walls
The nucleotide sequence of ScAGU115 α-glucuronidase was optimized for plant codon usage, because rare codons could reduce the efficiency of translation or even disengage in the translational machinery . Consequently, the percentage of low frequency (<30%) codons was decreased from 3% in the original sequence to zero in the synthetic gene. The resulting cDNA was cloned under the cauliflower mosaic virus 35S promoter, and the native signal peptide was replaced by the signal peptide from the aspen cellulase PttCEL9B3 to drive the protein to the apoplast [43,44]. The nucleotide sequence used in the overexpression vector is given in Additional file 1: Figure S1.
To verify if the aspen cellulase signal peptide effectively targeted the fusion protein to the apoplast in Arabidopsis, a 35S::ScAGU115:green fluorescent protein (GFP) construct was cloned and expressed in Arabidopsis for protein localization analysis. Since the signal from the GFP was weak and labile in the cell walls due to the low pH [45,46], the fusion protein detected instead using the anti-GFP antibody. This produced a stable signal that was visible mostly in cell walls, even after the protoplasts were plasmolyzed (Figure 2). The signal was also detected in protoplasts, likely corresponding to the protein in transit to cell walls. The aspen signal peptide was functional in Arabidopsis, suggesting that the ScAGU115 was also secreted to the cell wall and potentially deployable for post-synthetic modification of the cell wall.
Transformation of Arabidopsis with 35S::CEL9B3SP:ScAGU115 resulted in 15 independent homozygotic lines that contained a single insert as indicated by the segregation analysis in T2, and 14 of those lines expressed the transgene, as found with RT-PCR (Additional file 2: Figure S2A).
Extracts of transgenic lines expressing ScAGU115 exhibit enzymatic activity hydrolyzing internal (Me)GlcA side groups of xylan
The protein extracts from the inflorescence stems of the transgenic plants were assayed for α-glucuronidase activity using a commercial test kit. The substrate used in the kit is a mixture of aldotriouronic, aldotetraouronic, and aldopentaouronic acids (2:2:1) obtained by acid hydrolysis of glucuronoxylans, resulting in either internal or terminal MeGlcA substitution. Thus, this assay measures GH67 and GH115 types of activity. Background α-glucuronidase activity was observed in the wild type (WT) and was most likely due to endogenous Arabidopsis NADH that was co-extracted and interfered with the detection (Additional file 2: Figure S2B). Only 20% of the total number of transgenic lines that express the construct showed α-glucuronidase activity above the WT level (Additional file 2: Figure S2B). The low number of transformants showing α-glucuronidase activity was likely caused by the constitutive promoter, which may have triggered counteractive responses in plants, as has been seen in tall fescue expressing Trichoderma reesei endoxylanase .
The three lines that showed α-glucuronidase activity (lines 4, 5, and 10), and one line (6) that was transgenic but did not show a detectable level of α-glucuronidase activity were selected for further analysis and re-grown. RT-PCR analysis, performed on the re-grown lines, showed that the levels of the ScAGU115 transcripts were higher in lines 4, 5, and 10 and lower in line 6 (Figure 3A), which was consistent with the earlier activity assays. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of soluble proteins extracted from the stems of the transgenic and WT plants revealed the presence of two novel protein bands in lines 4, 5, and 10, which were not detected in the WT and in line 6 (Figure 3B). Western blot analysis using the anti-ScAGU115 antibody confirmed that the novel bands contained ScAGU115, since signals were detected in lines 4, 5, and 10 (Figure 3C), and after longer exposure in line 6 (data not shown). The lower molecular weight protein band in the transgenic lines migrated close to the native ScAGU115 protein (control) at 125 kDa , indicating the glycosylation level in Arabidopsis closely resembled that of the native fungus. The higher molecular weight protein band may represent another form of processing in Arabidopsis.
To test if the expressed protein was active, α-glucuronidase activity was determined from the soluble proteins extracted from the inflorescence stems. The specific α-glucuronidase activity in the soluble proteins extracted from lines 4, 5, and 10 was about five to six fold higher than the background WT level, whereas no activity above the WT level was detected in line 6 (Figure 4A). Activity was also detected in wall-bound proteins, at an even higher level than in the soluble fractions (Figure 4A), confirming that there were significant amounts of wall-bound ScAGU115 enzyme in the transgenic lines.
To test more specifically for the AGU115 type of activity, the soluble extracts from Arabidopsis were further analyzed for their activity toward the internally substituted aldopentaouronic acid XUXX. Thin layer chromagraphy (TLC) analysis clearly showed that the XUXX substrate was degraded to xylotetraose and MeGlcA by lines 4, 5, and 10 (Figure 4B). Only a faint band corresponding to xylotetraose was produced by line 6. No apparent degradation of XUXX was observed in the WT extract or water blank (Figure 4B) or by a commercial GH67 enzyme tested as a comparison (data not shown). Xylotriose was also detected in the hydrolyzates of lines 4, 5, and 10, suggesting that the formed xylotetraose is further degraded to shorter oligosaccharides presumably by an endogenous β-xylosidase or endoxylanase likely to be present in crude protein samples . The enzymatic activity of the wall-bound proteins was also tested against the XUXX substrate, and similar degradation profiles were observed (Figure 4C). In summary, lines 4, 5, and 10 expressed ScAGU115 in an active form, in the apoplast, and in relatively high amounts.
Plant growth and development are not compromised by expression of active ScAGU115
Morphology of the transgenic plants (lines 4, 5, and 10) grown under long-day conditions was examined to test if the expression of ScAGU115 affected plant growth and development (Figure 5). There was a possibility that the AGU activity could induce changes in cell walls leading to morphological changes or that certain motifs in the foreign protein could be perceived as pathogen-related molecular patterns (PAMPs) triggering defense responses that slow the growth [48,49]. No differences in plant height or rosette diameter were observed (Figure 5). The morphology of the plants was similar to those of the WT, and no obvious stress responses, such as poor growth, or leaf necrosis, or senescence, were observed.
Cell wall chemistry and integrity are not affected in the Arabidopsis transgenic lines that express ScAGU115
Since the recombinant ScAGU115 possesses activity toward the internal MeGlcA, we were interested in how the enzyme acts on the native AcGX polymers within the cell wall. The alcohol insoluble residues (AIRs) of the inflorescence stem tissues were examined for chemotypic changes caused by the expression of ScAGU115 in the apoplast. The analyses were performed only on lines 4 and 5 that produced the highest levels of the recombinant enzyme. The analysis of non-cellulosic sugars showed that there were no changes in the (Me)GlcA or other sugar components in lines 4 and 5 compared to the WT (Table 1). This resulted in similar molar ratios of (Me)GlcA to Xyl in the transgenic and WT plants (Figure 6A). As a comparison, we studied the Arabidopsis gux1gux2 double mutant in which the two endogenous GlcATs, GUX1 and GUX2, were disrupted . A significant decrease in total (Me)GlcA content was detected in gux1gux2 (Table 1), and as a result, the molar ratio of (Me)GlcA to Xyl was decreased by 70% compared to the WT (Figure 6B). Notably, the amount of Xyl and Man was increased by 59% and by 30%, respectively, in gux1gux2 compared to the WT, whereas no changes in Xyl or Man levels were detected in the ScAGU115 transgenic lines (Table 1).
To further examine the xylan structure in the transgenic plants in detail, AcGX was extracted with DMSO after mild delignification, and the structure was analyzed with heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectroscopy . With this method, it is possible to distinguish nonacetylated and acetylated Xyl residues, including the ones carrying the (Me)GlcA substituent, and determine their relative content. No differences in the content of any of the xylan structural elements, including acetylated (X3G2) and nonacetylated (XG2) MeGlcA-Xyl, were detected in the AcGX samples isolated from lines 4 and 5 compared to the WT (Additional file 3: Figure S3). In contrast, a drastic decrease in the (Me)GlcA substituted Xyl was clearly detected in gux1gux2 .
The guaiacyl (G), syringyl (S), and p-hydroyphenyl (H) lignins and the carbohydrate fraction in the transgenic and WT plants were examined via pyrolysis-gas chromatography/ mass spectrometry (Py-GC/MS) (Additional file 4: Table S1). The S and G lignins remained unchanged, while the H lignin was slightly increased by 4% in line 4 (t test, p < 0.05), possibly as a stress reaction in this particular line . The carbohydrate fraction was unchanged between the samples, indicating the main constituents of the cell wall were not affected by ScAGU115 expression. This is consistent with the comparable non-cellulosic sugar content obtained in the sugar analysis.
To visualize the distribution of the (Me)GlcA residues in the stem sections of the transgenic and WT plants, we labeled the basal stem sections using the (Me)GlcA specific antibody UX1 . A weak signal was evident in the water-treated WT (Figure 7A), especially in the interfascicular fibers, but it was missing in the water-treated samples of line 4 (Figure 7B) and line 5 (Figure 7C). In the alkaline-treated stem sections, where esterified acetyl residues were removed, the signal was strongly visible in all samples, and the signal strength was the same for the transgenic and WT plants. Acetylation is known to restrict the binding of UX1 to (Me)GlcA residues . No signal was detected in either the water- or alkaline-treated gux1gux2 sections (Figure 7D). The water- and alkaline-treated sections were labeled with the xylan-specific AX1 antibody , indicating that xylan was present and accessible to the antibodies in all samples. The disappearance of UX1 labeling in the water-treated ScAGU115 shows that all UX1-accessible (Me)GlcA residues, which are present in small amounts in the WT and most likely are situated in the regions of xylan that are not acetylated, were cleaved in the transgenic lines.
Finally, to test if wall digestibility was affected by the removal of ScAGU115 accessible (Me)GlcA moieties, the main inflorescence stems of the transgenic (lines 4 and 5) and WT plants were subjected to hot water or 0.5 M NaOH pretreatments, after which the stems were hydrolyzed with a mixture of commercial lignocellulose-degrading enzymes. There was no difference in the reducing sugars released from the stem tissues by the enzymes after any of these pretreatments (Additional file 5: Figure S4), which shows that cell wall digestibility in the ScAGU115 transgenic plants did not change.
Codon-optimized ScAGU115 α-glucuronidase was produced in an active form in Arabidopsis without altering plant development. The recombinant enzyme showed activity against internal (Me)GlcA substitutions of non-acetylated aldopentaouronic acid. However, no decrease in the (Me)GlcA content or improved digestibility of the stem tissues was observed despite the high reactivity of ScAGU115 towards the non-acetylated hardwood xylan polymer in vitro has been detected . The lack of quantitatively detectable change in the (Me)GlcA content (Figure 6) or (Me)GlcA substituted Xylp units (Additional file 3: Figure S3) in the xylans of ScAGU115 expressing lines compared to the wild type indicates that the action of this enzyme is limited in planta. Therefore, it appears that reducing the (Me)GlcA content by mutating the endogenous GlcATs, GUX1 and GUX2, is more efficient than post-synthetic modification with an exogenous GH115 α-glucuronidase. Interestingly, gux1gux2 showed, in addition to a significantly reduced (Me)GlcA content, an elevated amount of xylan and mannan as indicated by the increased Xyl and Man content (Table 1). The increase in Xyl levels in gux1gux2 was similarly observed by . This may suggest a competing utilization of UDP-GlcA in the double mutant as the substrate for UDP-GlcA decarboxylase to produce UDP-Xyl .
The unchanged levels of (Me)GlcA, in spite of active AGU115 being expressed in the apoplast, are most likely caused by the acetylation in native GX. Arabidopsis GX is known to be highly acetylated. As many as 50% of the Xyl residues are either mono- or di-acetylated [9,13]. Furthermore, of the (Me)GlcA-substituted Xyl residues, only 23% are non-acetylated whereas 77% carry acetylation at the 3-O position . Moreover, the pattern of acetylation is rather uniform along the GX chain. Most acetyl groups are located in every other Xyl residue [9,54], and occasionally, on two adjacent Xyl residues . Therefore the sites where the acetyl groups are absent in several adjacent residues are probably very scarce. Since the presence of acetylation changes the hydrophobicity of xylans by replacing the hydroxyl group with the more hydrophobic acetyl, dense acetylation would expectedly affect the enzyme-substrate binding. In GH115 active sites, in addition to the important +1 subsite, the neighboring Xyl residues at the reducing end side (+R2, +R3) (nomenclature according to ) and the nonreducing end side (+NR2) of the xylan chain may be crucial for productive enzyme-substrate binding, especially since the enzyme is active on the internal MeGlcA substitutions [56,57]. Thus, despite their small size, the acetyl residues linked at or close to the (Me)GlcA substituted Xyl may interfere with productive substrate binding. The hindering effect of acetyl substitution on ScAGU115 action has been shown in vitro since only 10% of the theoretical MeGlcA was released from birch AcGX compared to the 49% yield from deacetylated GX . Thus, xylan acetylation is expectedly the key parameter restricting the action of GH115 enzymes in native cell walls. Further work is needed to test the activity of this family of α-glucuronidases using model substrates with well-defined acetylation patterns.
The proposed shielding of (Me)GlcA substituents by acetylation is consistent with the immunolocalization results for the UX1 antibody (Figure 7). A small but clear difference between the transgenic and WT plants in UX1 antibody binding to native cell walls, and no difference in UX1 binding after cell wall deacetylation was observed. Thus, the UX1 antibody marks the ScAGU115 accessible epitodes on native AcGX, which is known to be very low abundant in Arabidopsis . Although we did not detect a change in the content of the non-acetylated (Me)GlcA substituted Xyl in the DMSO-solubilized AcGX of transgenic plants with HSQC NMR, the signal from these residues in the WT was very low (Additional file 3: Figure S3). Moreover, the method extracts only ca. 20% xylan . Therefore, we propose that the UX1 labeling provided a more sensitive detection of the rare ScAGU115 accessible sites, revealing the action of this enzyme in planta (Figure 7).
The in planta modification of (Me)GlcA is, nonetheless, an attractive approach for better extractability of xylans as has been demonstrated with gux1gux2 . However, the structural heterogeneity of AcGX may not permit a single hydrolytic enzyme to work effectively. If the in planta modification of (Me)GlcA content by GH115 α-glucuronidase is hindered by xylan acetylation, a viable approach could be co-expression with an acetyl xylan esterase (AXE) to obtain synergism between these side-group removing enzymes. Production of the carbohydrate esterase (CE) family 1 AXE in plants has been attempted, and the transgenic plants showed, similarly as with ScAGU115, no visible morphological changes and no effect on saccharification . No improvement in saccharification was observed in gux1gux2 hydrolyzed without pretreatment , even though the extractability of xylan was improved , which shows that a strong decrease in (Me)GlcA substitution by mutating endogenous GlcATs might not be optimal for biomass improvement for saccharification. Therefore, the co-expression of AGU115 and AXE in plants could be a strategic approach for designing a wall amenable to better xylan extractability and saccharification.
Nonetheless, the resistance of AcGX to ScAGU115 in planta, combined with the lack of adverse effects of the transgene on plants, opens up the possibility of using such transgenic plants to produce the active enzyme for biotechnological applications. For example, a thermostable variant expressed in biofuel feedstocks could be envisaged for removing hemicellulose more efficiently during pretreatment and for reducing enzyme loads during enzymatic hydrolysis. Thermostable xylanases have been engineered and expressed in plants, but these enzymes were also active in ambient conditions in planta . To our knowledge, the ScAGU115 is the first enzyme that does not appreciably change the cell wall in planta while exhibiting normal activity when extracted.
In this work, active GH115 α-glucuronidase from Schizophyllum commune was produced for the first time in plants. The ScAGU115 expressing Arabidopsis thaliana were viable and no morphological changes were observed. However, only low amount of cell wall (Me)GlcA substituents, which were recognized by anti-UX labeling of native xylans, was removed by the active enzyme. Moreover, the ScAGU115 expression did not improve the saccharification efficiency of the transgenic plants. The limited action of ScAGU115 in planta is envisaged to be due to shielding effects of acetyl substituents on xylans. Therefore, co-expressing the GH115 α-glucuronidase with an acetyl xylan esterase can be a strategic approach to modify the side groups of cell wall xylans.
Optimizing plant codon usage and cloning of the ScAGU115 α-glucuronidase cDNA sequence in Arabidopsis
The full-length cDNA encoding ScAGU115 α-glucuronidase (GenBank accession ADV52250.1)  was codon-optimized for expression in Populus, and the native signal peptide sequence was replaced with hybrid aspen cellulase PttCEL9B3 (GenBank accession AY660968.1; ) and flanked by attB1 and attB2 recombinant sites. The synthetic gene (GenScript (http://www.genscript.com) was recombined into the pDONR207 vector as an entry clone using the Gateway System (Invitrogen, Life Technologies), sequenced, and cloned into the destination vector, which was pK2WG7.0 for overexpression in Arabidopsis with a stop codon or pK7FWG2.0 for overexpression as the GFP-fusion protein for intracellular protein localization . The Arabidopsis thaliana (Columbia ecotype; Col-0) transformation was performed via Agrobacterium tumefaciens (GV3101) infiltration using the floral dip method .
Gene expression screening of the homozygotic lines
Fifteen homozygotic lines were obtained, and 10 plants for each line and the WT were grown in a 16 h photoperiod with 120 μmol m−2 s−1 light intensity at 23°C for 7 weeks. Basal 10 cm of the main stem and 5 cm of side shoots were dissected and divided into three biological replicates. The collected samples were frozen in liquid nitrogen before storage at –80°C. The plant tissues were ground in a liquid nitrogen bath using a mortar and pestle. The ground tissue was used for RNA isolation and protein extraction. Total RNA was isolated using TRIzol Reagent (Life Technologies) and treated further with DNase (DNA-free Kit, Ambion) to remove any potential genomic DNA contamination. A 1 μg RNA sample was used to synthesize cDNA (iScript cDNA Synthesis Kit, Bio-Rad), and 2 μl of the cDNA diluted 1:4 was used for PCR amplification. The gene-specific primers designed for amplification of ScAGU115 were SP5(F), 5’-tggaatgcacagggtatga-3’ and R1(R): 5’-caagcaccaacgtgcacggactcaggtgg-3’; and the expected size of the transcript product was 315 bp. Amplification of Actin2 (At3g18780) was used as the internal control, using the primers ACT1(F), 5’-ggtaacattgtgctcagtggtgg-3’and ACT3(R): 5’-ctcggccttggagatccacatc-3’; and the expected size for the transcript product was 201 bp. The forward primer designed for amplification of the Actin2 was intron spanning; thus, genomic DNA contamination in the sample was detectable by the appearance of a DNA band at 291 bp.
An aliquot of 300 μl buffer A (0.2 M sodium succinate, 10 mM CaCl2 and 1% (w/v) PVPP, pH 5.5)  was added into 100 mg ground stems, shaken at 4°C for 2 h and spun at 14,000 rpm for 15 min. The supernatants were collected as soluble fraction proteins. The extraction was continued by adding 200 μl of buffer B (0.2 M sodium succinate, 10 mM CaCl2, and 1 M NaCl, pH 5.5) into the residue to liberate the wall-bound proteins. The mixtures were shaken at 4°C for 30 min, followed by centrifugation as above, and yielded wall-bound protein fractions.
ScAGU115 α-glucuronidase activity assay
Protein concentrations were determined according to the Bradford method  and adjusted to 0.6 and 0.2 mg/ml for the soluble and wall-bound fractions, respectively. α-Glucuronidase activity assay was performed with 16 μg of protein using the Megazyme kit (Megazyme, Ireland; K-AGLUA).
Aliquots of soluble protein samples equivalent to 12 μg proteins were separated on SDS-PAGE alongside 60 ng of the native ScAGU115 α-glucuronidase . Western analysis was performed as described by . The proteins were blotted on the PVDF membrane and labeled with primary antibody (1:2000) raised in rabbit against the native ScAGU115 α-glucuronidase . The secondary antibody (1:10,000) was horseradish peroxidase conjugated anti-rabbit IgG (GE Healthcare, NJ, US), and the detection was done with Amersham ECL luminol reagents (GE Healthcare).
TLC analysis of ScAGU115 α-glucuronidase hydrolyzates
The α-glucuronidase activity in the protein samples was analyzed against the aldopentaouronic acid substrate, XUXX . XUXX (30 μg) was treated with 12 μg soluble proteins in extraction buffer A at 37°C overnight. The hydrolyzates were examined with TLC following the procedures described in . Briefly, 2 to 5 μl of the standards or samples were spotted on Silica gel 60 TLC plates (Merck) and developed in a butanol/acetic acid/water (2:1:1) solvent/aqueous mixture. For staining, the plates were dipped in a solution of 0.5% (v/v) thymol and 5% (v/v) H2SO4 in ethanol, dried for 5 min, and then heated at 100°C for 10 min. The plates were scanned within 15 min after staining. Before incubation with the XUXX substrate, the wall-bound proteins were desalted with Microcon centrifugal filters (30,000 MWCO; Millipore) according to the manufacturer recommended procedures, in order to ease the mobility of the hydrolyzates when they were separated on the silica plate. The XUXX was also incubated in buffer A (without PVPP) with an excessive amount of the Geobacillus stearothermophilus AGU67 α-glucuronidase (30 U/g XUXX; Megazyme).
Preparation of alcohol insoluble residues
Thirty plants for each of the transgenic lines that overexpress the 35S:: ScAGU115 construct (lines 4, 5, 6, and 10) and 30 WT plants were grown during a 16 h photoperiod with 120 μmol m−2 s−1 light intensity at 23°C for 7 weeks. Plant morphology was photographed once a week during weeks 2 to 5. Basal 10 cm of the main stem and 5 cm of side shoots were dissected and divided into five biological replicates. The collected samples were frozen in liquid nitrogen before storage at –80°C. The stems and shoots were freeze-dried and ground using a bead mill (30 Hz, 90 sec), and AIRs were prepared from the ground biomass as described in .
Analysis of non-cellulosic sugars in the stem tissues with acid methanolysis and gas chromatography (GC) analysis
The acid methanolysis procedures were modified from  for a small-scale analysis. The starch was removed by Bacillus licheniformis α-amylase (Megazyme, 5 U/mg AIR) , and 2 mg of the de-starched AIRs was placed in a KIMAX tube. The monosaccharide standards were premixed and dissolved in dry methanol, after which they were aliquoted into three parallel standard series. The standard series for arabinose and rhamnose were 2.5-10-25-40 μg; for galactose, mannose, galacturonic acid, glucuronic acid, and glucose, 5-20-50-80 μg; and for xylose, 50-100-400-800 μg. The monosaccharide standards were dried completely under a stream of nitrogen and dried further in a vacuum oven together with the preweighed de-starched AIRs at 40°C for 20 min. After that, 0.5 ml 2 M HCl/methanol was added to the samples and standards; and the mixtures were incubated at 90°C for 16 h. After the acid methanolysis, the tubes were cooled, and 25 μl of pyridine was added to neutralize the solution. An amount of 100 μg sorbitol was also added as the internal standard. The solution was evaporated completely under a stream of nitrogen; then 300 μl methanol was added, and the solution was evaporated again. The methyl ester methyl glycosides/methyl glycosides were trimethylsilylated and separated by gas chromatography according to the procedures described in  and , respectively.
Lignin content analysis by pyrolysis-GC/mass spectrometry
About 50 μg (±10 μg) of the AIRs were added in a pyrolyzer equipped with an autosampler (PY-2020iD and AS-1020E, Frontier Lab, Japan) and connected to a GC/MS (7890A/5975C; Agilent Technologies). After 20 sec of pyrolysis at 450°C, the pyrolyzate was separated on a DB-5 capillary column (30 m long, 0.25 mm i.d., 0.25 μm film thickness; Agilent Technologies) with the following temperature profile: 40°C- 32°C/min- 100°C- 6°C/min- 120°C- 15°C/min- 250°C- 32°C/min- 320°C. The total run time was 19 min, and the mass peaks were scanned in the range of m/z 35–250. Peak identification and integration were performed as described by  using the manufacturer’s software (Chemstation, Agilent Technologies).
Saccharification of biomass
Basal 10 cm of the main stem were collected from 10 plants (7 weeks old). Saccharification was performed in a high throughput assay developed by . Briefly, the stems were ground, pretreated either in water or 0.5M NaOH, washed five times in 25 mM NaOAc buffer, pH 4.5, and subjected to 8 h saccharification using 7 FPU/g of a 4:1 mixture of Celluclast and Novozyme 188 (Novozymes, Bagsvaerd, Denmark). After hydrolysis, the reducing sugars were determined using the MBTH colorimetric method as described in .
NMR analysis of AcGX
AcGX was isolated from about 150 mg of de-starched AIRs according to the procedures described in . Before the NMR measurement, the isolated AcGX was exchanged three times in D2O. NMR spectra were recorded at 22°C on a 600 MHz Bruker Avance III NMR spectrometer equipped with a Q-CPN cryoprobe. The quantitative HSQC spectra were acquired according to the procedures described in .
Immunolocalization of xylan and (Me)GlcA in basal stem sections
Samples (1 cm segments of basal inflorescence stems) were immersed in a fixative solution (4% paraformaldehyde and 0.05% glutaraldehyde in 25 mM phosphate buffer, pH 7.2). After three washes in 25 mM phosphate buffer, pH 7.2, the segments were dissected into approximately 3-mm-long pieces, dehydrated in a gradient ethanol (30%, 50%, 70%, 80%, 90%, 95%, and 99.5%) series, and embedded in LR White resin according to the manufacturer’s instructions (TAAB, Reading, UK). The incubation at each step was performed in a laboratory rotator. The immunolabeling procedures were performed according to  with modifications. Transverse 0.5-μm-thick sections were labeled with UX1 (1:3) and AX1 (1:20) primary antibody diluted in 1% BSA in 0.1 M phosphate buffer, pH 7.2. The secondary antibody was anti-mouse IgG conjugated to Alexa Fluor 647 (Life Technologies) diluted in 1:100 in 1% BSA and 0.05% Tween-20 in phosphate buffer, pH 7.2. The sections were mounted in Milli-Q water, and the fluorescence signal was observed using the excitation filter 646 nm and emission filter 664 nm.
GFP localization of ScAGU115 protein in Arabidopsis root cell walls
The full-length cDNA fused with GFP was cloned into the binary vector described above. Seven-day-old seedlings of the T2 generation were plasmolyzed in 20% (v/v) mannitol and immediately fixed in 2% (v/v) paraformaldehyde in MTSB buffer (50 mM PIPES, 5 mM EGTA, 5 mM MgSO4, pH 7) and 0.1% (v/v) Triton X-100 for 1 h. After washing in water, the seedlings were treated with 100% methanol for 20 min. The methanol concentration was gradually decreased every 2 min until the final concentration reached approximately 20%. Cell walls were digested in 2 mM MES pH5.5 with 0.2% (v/v) driselase (Sigma, MO; D9515-1G) and 0.15% (v/v) macerozyme R-10 (Duchefa Biochemie, Haarlem, the Netherlands; M8002.0001), and the mixture was incubated at 37°C for 30 min. After washing in water, the membranes were permeabilized with 3% (v/v) IGEPAL C630 and 10% (v/v) DMSO in MTSB buffer at 37°C for 30 min. The seedlings were washed three times in MTSB buffer and blocked with 3% (v/v) BSA in MTSB buffer for 20 min, followed by labeling with the primary rabbit anti-GFP antibody (TorreyPines Biolabs, NJ, US; TP401) diluted in 1:1000 in 1% (v/v) BSA in MTSB buffer at 37°C for 2 h. The seedlings were washed two times in MTSB buffer for 5 min followed by incubation with the secondary antibody goat anti-Rabbit IgG H&L conjugated with DyLight 594 (Agrisera, Sweden; AS111815) diluted 1:200 in 1% (v/v) BSA in MTSB buffer at 37°C for 1 h. The seedlings were washed two times in MTSB buffer for 5 min and mounted in AF1 anti-fadent medium (Citifluor, London, UK). Fluorescence signals were observed under an Axioplan inverted microscope equipped with a Zeiss LSM780 spectral confocal laser scanning microscope, using a 561 nm laser probe and a 582-670 nm emission filter.
Bovine serum albumin
Ethylene glycol-bis(2-aminoethylether)-N,N,N’,N’-tetraacetic acid
Green fluorescence protein
GlucUronic acid substitution of Xylan
Heteronuclear single quantum coherence spectroscopy
Molecular weight cut-off
Nuclear magnetic resonance
Sodium dodecyl sulphate-polyacrylamide gel electrophoresis
Thin layer chromatography
β-D-Xylp-(1 → 4)-[4-O-methyl-α-D-GlcpA-(1 → 2)]-β-D-Xylp-(1 → 4)- β-D-Xylp-(1 → 4)-D-Xyl
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Support from the Cell Wall and Carbohydrate analytical facility at UPSC/SLU for py-GC/MS analysis (supported by Bio4Energy) is gratefully acknowledged. Dr. Liisa Virkki from the University of Helsinki and Dr. Hannu Maaheimo from VTT Technical Research Center are thanked for their help in the NMR analysis. The study was financially supported by the Academy of Finland and Formas through the joint WoodWisdom-Net Programme (HemiPop project no. 1124281), FP7 Project RENEWALL, the Swedish Research Council (Vetenskapsrådet), Strategic Research Council, and Vinnova program Berzelius grants (E.J.M.); and the Glycoscience Graduate School, NordForsk network (project no. 29660), and the Finnish Cultural Foundation (S.-L.C.).
The authors declare that they have no competing interests.
S-LC and MDM implemented the experimental work, SK participated in the UX1 and AX1 labeling experiment, LDG and SJM-M. measured the saccharification potential, MT supervised the chemotyping work, and EJM designed the project and supervised part of the work. All co-authors participated in writing the manuscript. All authors read and approved the final manuscript.
Sun-Li Chong and Marta Derba-Maceluch contributed equally to this work.
ScAGU115 codon optimized sequence used for the expression in Arabidopsis. (A) Comparison of native and codon-optimized ScAGU115 sequences using CLUSTAL 2.1 alignment. (B) Nucleotide sequence corresponding to the native ScAGU115 signal peptide and the signal peptide originating from hybrid aspen cellulase PttCEL9B3 used in the expression vector.
Screening of Arabidopsis homozygotic lines expressing ScAGU115 α-glucuronidase. (A) Gene expression analysis and amplification of Actin2 gene was used as the internal control. (B) Soluble protein was extracted from stem tissues of the 7 weeks old plants, and was analyzed for the α-glucuronidase activity using Megazyme kit. The error bar represents the standard deviation of three biological replicates.
Relative content of substituted and non-substituted internal Xylp residues in the O-acetylglucuronoxylan of transgenic (lines 4, 5) and WT plants based on integration of cross peaks in 2D qHSQC spectra. X2, [2-O-Ac]-β-D-Xylp; X3, [3-O-Ac]-β-D-Xylp; X23, [2,3-O-Ac]-β-D-Xylp; X3G2, [α-D-(Me)GlcpA*(1 → 2)][3-O-Ac]-β-D-Xylp; XG2, [α-D-(Me)GlcpA*(1 → 2)]-β-D-Xylp; * representing both GlcpA and MeGlcpA since their cross peak signals were unresolved in the spectra. The error bar represents the standard deviation of two biological replicates.
Comparison of carbohydrate and lignin components in the stem tissues. The guaiacyl, syringyl and p-hydroxyphenyl lignins; and carbohydrate fraction in the transgenic (lines 4, 5) and WT plants were analyzed by pyrolysis-gas chromatography/ mass spectrometry. The ± represents the standard deviation of five biological replicates. *p value < 0.05, t-test.
Digestibility of the main stems from transgenic (lines 4, 5) and WT plants. The main stem tissues were ground and pre-treated by (A) water, and (B) 0.5M NaOH before the enzymatic hydrolysis. Error bar represents standard deviation of three biological replicates.
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Chong, S., Derba-Maceluch, M., Koutaniemi, S. et al. Active fungal GH115 α-glucuronidase produced in Arabidopsis thaliana affects only the UX1-reactive glucuronate decorations on native glucuronoxylans. BMC Biotechnol 15, 56 (2015) doi:10.1186/s12896-015-0154-8
- Xylan acetylation
- 4-O-methylglucuronic acid
- Xylan degradation
- Feedstocks for biofuels
- Secondary cell walls