Highly efficient concentration of lenti- and retroviral vector preparations by membrane adsorbers and ultrafiltration
© Zimmermann et al; licensee BioMed Central Ltd. 2011
Received: 22 December 2010
Accepted: 20 May 2011
Published: 20 May 2011
Lentiviral vectors (LVs) can efficiently transduce a broad spectrum of cells and tissues, including dividing and non-dividing cells. So far the most widely used method for concentration of lentiviral particles is ultracentrifugation (UC).
An important feature of vectors derived from lentiviruses and prototypic gamma-retroviruses is that the host range can be altered by pseudotypisation. The most commonly used envelope protein for pseudotyping is the glycoprotein of the Vesicular Stomatitis Virus (VSV.G), which is also essential for successful concentration using UC.
Here, we describe a purification method that is based on membrane adsorbers (MAs). Viral particles are efficiently retained by the anionic exchange MAs and can be eluted with a high-salt buffer. Buffer exchange and concentration is then performed by utilizing ultrafiltration (UF) units of distinct molecular weight cut off (MWCO). With this combined approach similar biological titers as UC can be achieved (2 to 5 × 109 infectious particles (IP)/ml). Lentiviral particles from small starting volumes (e.g. 40 ml) as well as large volumes (up to 1,000 ml) cell culture supernatant (SN) can be purified. Apart from LVs, vectors derived from oncoretroviruses can be efficiently concentrated as well. Importantly, the use of the system is not confined to VSV.G pseudotyped lenti- and retroviral particles and other pseudotypes can also be purified.
Taken together the method presented here offers an efficient alternative for the concentration of lenti- as well as retroviral vectors with different pseudotypes that needs no expensive equipment, is easy to handle and can be used to purify large quantities of viral vectors within a short time.
Lentiviral vectors (LVs) are versatile tools for molecular medicine and gene therapy . They are able to integrate their viral genome into both dividing and non-dividing cells [2, 3]. Most LVs presently used are based on the human immunodeficiency virus type 1 (HIV-1), which is the most extensively studied lentivirus . In addition, lentivectors have been derived from a variety of other lentiviruses (e.g. simian, equine and feline lentiviruses) .
Lenti- as well as spuma- and oncoretroviruses belong to the large family of Retroviridae . Retroviruses are - besides adenoviruses - the most widely used vectors in gene therapy clinical trials (http://www.wiley.co.uk/genmed/clinical). They were also the first vectors that have been applied in gene therapy. Most oncoretroviral vectors are based on the Moloney murine leukemia virus (MoMLV) . The wild type MoMLV and retroviral vectors carrying the original MoMLV envelope proteins transduce only cells that express the ecotropic receptor, i. e. rodent cells [7, 8]. However, oncoretroviral vectors are sensitive to environmental conditions and lose their infectivity relatively quickly [9, 10] resulting in a loss of infectious particles (IP) during purification . Lenti- as well as retroviral vectors can also be pseudotyped with different envelope proteins from other viruses resulting in different characteristics of the vectors, either regarding their surface charge, physical stability and/or biological activity . Pseudotyping of LVs or oncoretroviral vectors with VSV.G broadens the host range by enabling them to enter the cells via receptor mediated endocytosis . Furthermore, VSV.G-pseudotyped viral vectors were shown to be more stable and can be concentrated by ultracentrifugation (UC) without a significant loss in titer [13, 14].
The most commonly used retro- as well as lentiviral vector systems are based on a split genome approach that provides the viral genes necessary in trans for production of viral particles in the helper/packaging cells [15, 16]. The viral particles are released into the cell culture supernatant (SN) and can be easily harvested without need to disrupt the cells. Presently, the most common method to concentrate these viral particles from cell culture SN is UC [11, 17]. In addition, different methods have been studied to purify lenti- and retroviral vectors including chromatography, ultrafiltration (UF) and coprecipitation with salts and/or polymers [11, 18, 19].
Here, we analyzed a purification system (LentiSELECT, Sartorius Stedim Biotech, Goettingen, Germany) that combines membrane adsorption and UF for the concentration of VSV.G pseudotyped lenti- as well as retroviral particles. The method used is based on binding of the viral particles to an anionic exchange membrane adsorber (MA) followed by UF of the eluted purified particles. Different volumes of cell culture SN, up to 1,000 ml, can be purified and the resulting recovery rates are reproducible and comparable to those achieved by UC. Furthermore, the method was also successfully applied for the purification of lentiviral particles without envelope proteins and retroviral particles with an ecotropic envelope, demonstrating the broad range of this application.
Purification of lentiviral particles by using membrane adsorbers
After loading of the lentiviral particles to the MA and washing, retained viral particles were eluted with high salt elution buffer (1 M sodium chloride). Given the potential detrimental effect of high salt on the functionality of the viral particles, we investigated the impact of the hypertonic environment on viral infectivity. Incubation of the eluted LVs in the high salt buffer for one hour on ice resulted in a significant reduction of infectivity by 16.0 ± 6.4%. Within 2 hours 22.1 ± 6.4% of IPs were lost (Additional file 1, Figure S1). To prevent loss of infectivity a buffer exchange step was included to recover the viral particles in a buffer with physiological salt concentration (e.g. Hank's buffered salt solution (HBSS)). Buffer exchange as well as further concentration of the viral particles was achieved by using UF columns. The membranes of these columns have pores of distinct size that can retain viral particles, whereas smaller molecules and particle fragments can pass through the pores. Vivaspin20 UF units with 100 K or 300 K MWCOs were compared that can accommodate up to 20 ml of MA eluate (Figure 1B). In both cases, only 1.5 ± 0.1% of the viral particles were detected in the flowthrough. Although UF units with a MWCO of 300 K require less centrifugation time than the 100 K units due to the larger pore size (data not shown), the 100 K unit showed significant higher recovery of the viral particles (recovery rate of 88.7 ± 3.1%). In summary, the Vivaspin20 UF unit with a MWCO of 100 K is suitable for rebuffering, purifying as well as concentrating of the lentiviral particles after elution from the MA.
Purification of lentiviral particles from small starting volumes
Comparison of different methods for purification of LVs.
(n = 7)
3.0 × 107
(± 4.7 × 106)
1.2 × 109
(± 1.8 × 108)
1.3 × 108
(± 2.2 × 107)
6.2 × 108
(± 9.5 × 107)
1.8 × 109
(± 4.0 × 108)
5.8 × 108
(± 1.2 × 108)
(n = 3)
1.2 × 107
(± 1.3 × 106)
4.7 × 108
(4.8 ± × 107)
6.8 × 108
(± 8.9 × 107)
2.1 × 108
(± 2.1 × 107)
(n = 6)
1.4 × 107
(± 8.6 × 105)
7.1 × 109
(± 5.2 × 108)
1.5 × 108
(± 3.5 × 107)
2.7 × 109
(± 3.5 × 108)
2.7 × 109
(± 3.7 × 108)
2.8 × 109
(± 5.0 × 108)
(n = 3)
2.5 × 107
(± 6.6 × 106)
1.3 × 1010
(± 3.3 × 109)
6.1 × 109
(± 1.1 × 109)
4.6 × 109
(± 1.1 × 109)
(n = 3)
1.8 × 107
(± 4.9 × 106)
1.9 × 1010
(± 5.2 × 109)
1.7 × 108
(± 4.8 × 107)
7.0 × 109
(± 1.9 × 109)
5.4 × 109
(± 1.8 × 109)
8.6 × 109
(± 3.6 × 109)
To compare the method presented here with a standard procedure, we used a well established UC protocol  consisting of an initial centrifugation at 61,700 g for 2 h, followed by loading the resuspended viruses on a sucrose cushion. After a second spin at 53,500 g for 2 h, the viral precipitate was resuspended in ~330 μl HBSS. Starting initially with 4.7 × 108 IPs in the cell culture SN 47.7 ± 4.8% of the IPs were recovered by UC (Table 1 and Figure 2B), which is not significantly different from the recovery rate obtained by use of the MA/UF combination (p = 0.445).
Purification of lentiviral particles from large starting volumes
Next, we tested whether larger volumes of cell culture SNs can be processed with MAs. For this purpose, we used a larger MA (LentiSELECT500) that can accommodate up to 500 ml starting volume. Using this MA/UF setup 39.6 ± 5.5% (2.8 × 109 ± 5.0 × 108 IPs in approximately 1.1 ml) of the LVs were finally recovered from the cell culture SN (Table 1 and Figure 2C). This corresponds to a 193 fold enrichment of viral particles in the concentrate compared to the starting solution. Considering the differences in the reduction in volume from SN to concentrate for the small and the large MA, the overall enrichments are not significant different.
Using UC to purify viral particles from the same starting volume of 500 ml of SN, a recovery rate of 40.1 ± 10.9% was achieved (Table 1 and Figure 2D). Again, no significant difference between the recovery rates obtained by the use of MA/UF setup and UC was observed (p = 0.480).
It should be noted that for such large volumes UC is a time-consuming procedure, because multiple centrifugation runs are necessary due to the limited capacity of the rotors. For 500 ml cell culture SN the standard UC protocol requires overall 4 runs each lasting 2 hours (3 times at 61,700 g with a loading volume of 180 ml per run and a final concentrating run at 53,500 g). In contrast, loading, washing and elution of the MAs and subsequent UF requires only around 3 h.
To test whether two large MA units can be serially connected for further upscaling, we directly coupled two units. To evaluate the efficiency of the serial MA set-up, 1,500 ml of cell culture SN were prepared and 1,000 ml were loaded on two serially connected MAs and 500 ml were loaded on a single MA. The flowthrough was collected stepwise in 50 ml fractions and the biological titer (in IP/ml) was determined, respectively (Additional file 3, Figure S3). The two set-ups showed increasing concentrations of viral vectors in consecutive flowthrough fractions. For the single MA around 10% of the initial viral load was in the flowthrough after adding approximately 420 ml of cell culture SN onto the MA (Additional file 3, Figure S3A). Similarly, for the two coupled MAs 10% of the loaded viral particles were found in the flowthrough after application of 850 ml of starting volume (Additional file 3, Figure S3B). Thus, the maximal loading volume is ~500 ml and ~1,000 ml for one unit and for two coupled units, respectively. In summary, a serial connection of two large MAs can be used to increase the volume of loading material to up to 1,000 ml of cell culture SN. Purification of 1,000 ml of cell culture SN with a two-MA-setup and UF (LentiSELECT1000) resulted in a recovery rate of 43.6 ± 9.4%, displaying an enrichment of almost 300 fold from starting volume to concentrate (Table 1 and Figure 2E). This is comparable to the enrichments achieved by the purification of smaller SN volumes (40 ml or 500 ml) with MA/UF considering the reduction in volume from SN to concentrate.
Analysis of the purified lentiviral vectors
A further parameter to compare different purification methods is the ratio of biological versus physical titer. This ratio indicates the percentage of viral particles that are actually infectious as compared to the overall viral particles (physical titer). We determined the biological titer by FACS analysis of transduced cells. The physical titer (viral particles/ml, VP/ml) was quantified by two methods that measure different constituents of the particles, i.e. the lentiviral capsid protein p24 or the viral genome as measured with quantitative Realtime PCR (QRTPCR). We analyzed the ratio of the biological and the physical titer of LV preparations derived from purifications using either MA/UF or UC with different starting volumes (Figure 3D). Overall the IP/VP ratios were higher for the low volume preparations independently of the purification method used and ca. 5 - 20% of the particles purified from low volumes were biologically active, whereas only 1 - 9% purified from larger volumes were infectious. These ratios are in the same range or even higher than those found in the literature where ratios between 0.1 to 1% were observed [22, 23].
Comparison of the two purification methods revealed also considerable variations: The IP/VP ratios for UC are in the range of 7 - 20% and 9 - 13% for p24 and QRTPCR method, respectively. For MA/UF the IP/VP lies in the range of 4 - 6% and 1 - 5% for p24 and QRTPCR, respectively. Statistical analysis of the QRTPCR data showed that at high volumes there is a significant difference between MA/UF and UC, but there is no significant difference between the two purification methods at low volumes (Figure 3D). In contrast, the p24 data showed no significant difference between MA/UF and UC after purifying large volumes and significant difference between the two purification methods at low volumes (Figure 3D). Thus, there is a considerable variation and even conflicting results between the different assay methods available for the quantification of the physical titer (i. e. total number of viral particles). Nevertheless, one can conclude that the IP/VP ratios for both UC and MA/UF are in the same range. Both methods exhibited a similar efficacy in purifying biologically active viruses (see also Table 1) with a tendency of higher IP/VP ratios after UC purification.
The purity of LV preparations is an important issue, especially in clinical applications. Therefore, we analyzed MA/UF preparations for their protein (Figure 3E) and DNA content (Figure 3F). Use of DMEM with FCS for culturing the packaging cells resulted in a high concentration of proteins in the SN as well as in the concentrate presumably due to presence of serum proteins especially albumin (molecular weight: 67 kDa). Next, we tested whether serum free medium can be used for purification of LV containing SN. Two different serum-free media (HyClone SFM4MegaVir and Panserin608) were tested. These media clearly resulted in a reduction of protein concentration in the SN with HyClone SFM4MegaVir leading to the highest reduction of protein carry-over in the concentrate (Figure 3E). The IPs applied to the protein gel were in the same range (1 to 3 × 105 IPs for SN and 1 to 2 × 107 IPs for the concentrate) indicating that use of serum free medium does not influence the LV infectivity. Thus, cultivation of producer cells after transfection can be performed with serum free medium if reduction of the protein content of the LV preparations is desired.
To determine DNA contaminations in the concentrate, we analyzed samples from LV purifications on an agarose gel with and without treatment with benzonase (Figure 3F) . Without treatment with benzonase (-benz, Figure 3F) high concentrations of DNA were present in the LV concentrates. In contrast, benzonase pretreatment of the SN efficiently reduces the DNA content (+benz, Figure 3F). The biological titers of the concentrates obtained with the two purifications were in the same range (-benz: 1.3 × 109 IP/ml; +benz: 1.9 × 109 IP/ml), indicating that benzonase treatment does not impair the biological activity of the LVs.
Concentration of non-VSV.G pseudotyped lentiviral vectors
Presently, most LVs used are pseudotyped with VSV.G, mainly due to its broad host range, high infectious titers and stability during UC [1, 15]. Nevertheless, for some applications other envelope proteins are required [25, 26]. Furthermore, toxicity of VSV.G pseudotyped vectors as well as an induction of immune response upon systemic administration has been observed [13, 27].
Purification of oncoretroviral vectors
Retroviral vectors have been established from different retroviruses. They play an important role in gene therapy . Among the retroviruses, oncoretroviruses represent presently the most commonly used vector type. Therefore, we tested whether the MA system can also be applied for the purification of oncoretroviral vectors. We used MoMLV-derived vectors containing an eGFP expression cassette under control of the MoMLV-LTR (Figure 4B) . In initial experiments, VSV.G pseudotyped retroviral as well as VSV.G pseudotyped lentiviral particles were purified in parallel using 40 ml of cell culture SN and the small MA/UF combination, respectively. The recovery rate for the VSV.G pseudotyped retrovirus as analyzed by FACS was almost 30% (data not shown) demonstrating the utility of the MA system also for this vector system.
Although retroviruses that carry the ecotropic envelope have a narrow host range, this type of vector is also widely used . Therefore, we tested the MA/UF setup for the purification of 40 ml cell culture SN containing ecotropic oncoretroviral vectors. For comparison, we additionally analyzed oncoretroviral vectors with VSV.G envelope. Samples were analyzed using a C-type RT activity kit (Figure 4C). In the elution fraction 38.5 ± 1.3% of the VSV.G pseudotyped particles and 29.8 ± 2.5% of the retroviral particles with ecotropic envelope were recovered, respectively. After the UF, the recovery rate of the ecotropic virus was 10.0 ± 0.3% whereas 19.2 ± 0.7% of the initially applied VSV.G pseudotyped particles were detected in the concentrate.
In summary, these data indicate that VSV.G is not necessary for binding to the MA and that also purification of viral particles pseudotyped with other envelope proteins is possible. Although binding to the adsorber works best with VSV.G envelope, these results demonstrate the broad application spectrum of the MA/UF system presented in this study.
Here, we describe a method for purification and concentration of lentiviral as well as oncoretroviral particles. Due to their capability of integrating their RNA after reverse transcription into the host genome, recombinant retroviral vectors are versatile tools in a broad spectrum of applications. LVs have become a convenient alternative to oncoretroviral vectors, because of their ability to transduce dividing as well as non-dividing cells.
Presently, the most common way of concentrating VSV.G pseudotyped viral vectors is UC. However, purification methods based on UC are difficult to scale up and time-consuming due to the limited capacity of the centrifuges. Furthermore, impurities having a similar density as the viral particles (membrane vesicles of the host cells e. g.) are coprecipitated during the centrifugation steps [29, 30]. Alternatively, chromatography can be applied for vector concentration, including affinity chromatography, anion exchange and size exclusion. Chromatography is a very useful procedure to separate macromolecules like DNA, proteins and also viral vectors. But many chromatographic media are inapplicable because of the relatively labile nature of lenti- and retroviral vectors . Affinity chromatography strategies are based on streptavidin-biotin interaction , heparin binding  and immobilized metal affinity . In anionic exchange chromatography the negatively charged viral vectors bind to the positively charged chromatographic material. Bound virus can be then eluted by high salt buffer [11, 18, 34]. Elution with high salt buffers significantly reduces the infectivity of viral vectors, very likely due to an increase in osmotic pressure and a subsequent damage of the viral membrane. We found that only one hour of exposure to high salt (1 M NaCl) on ice is enough to inactivate 16.0 ± 6.4% of the LVs (Additional file 1, Figure S1). Others observed a reduction by 50% of infectious retroviral particles when exposed to high salt for one hour at room temperature . Therefore, further purification steps are necessary . However, anionic exchange requires no modification of the viral vectors such as biotinylation or his-tagging and is fast, versatile and easy to scale up [11, 35, 36]. Several anion-exchange chromatographic matrices have already been investigated with different binding capacities for retroviral particles . Another chromatographic procedure is size exclusion. Although it is a very powerful separation method, it is mainly applied as a polishing step due to difficulties in up-scaling and a low throughput [11, 38]. Another way to purify lenti- and retroviral vectors is UF through membranes with various pore sizes (20-500 kDa). Although UF is a fast and simple purification method, an undesirable side effect is concentration of macromolecules derived from cell debris . Further alternatives for purifying lenti- and retroviral particles are precipitation with salt buffers (ammonium sulphate, calcium phosphate) and/or polymers (e.g. polyethylene glycol, poly-L-lysine). But this method has the disadvantage that the salts and polymers as well as impurities (e.g. cell debris) are co-sedimented and therefore, additional purification steps are often necessary. Furthermore, this method has a low selectivity and is difficult to scale up [11, 40].
Here, we used a combination of anionic exchange and UF for the purification of VSV.G pseudotyped lenti- and retroviral particles. The virus was bound to the cationic membrane by loading the cell culture SN to the MA. Elution of the viral particles was achieved by application of high salt buffer. However, due to toxic effects of salt buffers with high molarity [32, 38] subsequent rebuffering is necessary. We used UF units for desalting and concentration, leading to high titer LV preparations with a biological titer in the range of 2 to 5 × 109 IP/ml.
MAs of different capacity were applied to purify 40 ml and 500 ml of cell culture SN, respectively. The number of infectious lentiviral particles obtained in the concentrates after MA/UF was similar or even higher as compared to preparations purified with UC of the same starting volume (Additional file 4, Figure S4). Importantly, the MA/UF system allows for purification of up to 1,000 ml of starting volume containing LVs by a serial coupling of two large MAs and final UF. Furthermore, the MAs used in our study can be connected to FPLC (data not shown). This enables an automation of the purification procedure as well as monitoring of different parameters like UV extinction or conductivity.
For use of LVs in clinical trials (e. g. ), high titer vector preparations are needed that can be reproducibly obtained at large scale. Impurities that derive from transfection and cell debris of producer cells as well as medium components should be minimized in the LV preparations for such applications. In addition, some primary cells (e.g. primary cortical neuronal cultures) have been shown to be sensitive to toxic effects of FCS components supplemented in the medium . In this context it is of interest that we observed a clear reduction of protein and DNA contaminants by use of serum free medium and after treatment of cell culture SN with benzonase, respectively (Figure 3E and 3F) [24, 43].
Another important property of LV preparations is the ratio of infectious vs. total viral particles. Overall, we observed that between 1 and 20% of the purified particles were biologically active, which is similar or even better than already published IP/VP ratios (0.1 to 1%) [22, 23]. These differences might be due to various protocols for LV preparation and purification procedures as well as cell lines and constructs used.
Different set ups for the cultivation of the adherent HEK 293T packaging cells have been described in the combination with MAs. For example Kutner et al published a combination of multilayered flasks with a gas permeable growth surface (called HYPERFlask vessels) and anionic exchange chromatography . Cultivation of the packaging cells in the HYPERFlask vessels, instead of conventional cell culture dishes, resulted in 10 fold increased LV production . Furthermore, LV generation of cells in suspension culture were recently analyzed by Lesch et al to facilitate a scalable LV preparation for gene therapy applications . For this purpose, baculovirus based LV production of suspension cells was used for transduction of the packaging cells with the lentivector/packaging plasmids instead of the commonly applied transfection of adherent cells by calciumphosphate. However, in order to remove the baculoviruses a purification step had to be included .
It remains to be shown that these systems can also be used for particles carrying different envelopes and for vectors derived from oncoretroviruses.
An outstanding feature of the purification method described herein is that it can be applied for the purification of lenti- as well as oncoretroviral vectors. Although a direct comparison between viral vectors derived from different members of the retrovirus family is not feasible (e.g. transgene expression driven by CMV versus LTR elements in the lentiviral and retroviral vectors, respectively), the recovery rates obtained with the VSV.G pseudotyped retrovirus is in the similar range as the recovery of VSV.G pseudotyped lentiviruses.
In addition, viral particles pseudotyped with different envelopes can be purified, which broadens the spectrum of possible applications considerably. Apart from VSV.G also other glycoproteins were shown to be useful for pseudotyping lentiviral particles including envelope proteins from ross river virus, semliki forest virus, mokola virus or rabies virus [45, 46]. Initially, we showed that purification of LVs is possible even without any envelope protein showing that the presence of VSV.G is not a perquisite for LV purification and opening the possibility of alternative pseudotyping. In this context is of interest that the MA/UF system can also be used to purify viral particles carrying an ecotropic envelope. However, purification of the oncoretroviral particles with VSV.G pseudotyping resulted in a significant higher recovery rate compared to ecotropic envelope protein. This difference might be due to reduced stability of ecotropic pseudotyped viral particles . In general, the lenti- and retrovirus stability depends not only on the particular envelope protein but also on the producer cell line type from which the viral lipid envelope was derived [9, 13] and other factors like buffers, pH, shear forces, temperature and especially presence of high salt concentrations [32, 37, 43].
The MA/UF method described here is a versatile way to purify high titer lentiviral as well as oncoretroviral particles starting from small and large volumes. With the MAs described a broad range of starting volumes up to one liter of virus supernatant can be rapidly processed. Importantly, even at large scale/higher input volumes the method yields reproducibly high virus titers. Furthermore, the procedure is easy to handle and can even be connected to an automated purification system such as FPLC allowing for monitoring accurate salt gradient elution, which is an important factor for further use in a clinical setting. In contrast to the widely used UC method, no expensive equipment like ultracentrifuges are needed.
Importantly, this method can be used for vectors derived from different members of the large family of retroviruses independently of the envelope (pseudotyping) used. Taken together, the MA/UF combination described in this study offers a flexible and rapid way to purify lentiviral particles as well as oncoretroviral vectors with different pseudotypes from a broad range of starting volumes at reproducibly high titers.
Unless stated otherwise, all chemicals and biochemicals used in this study are from highest purity (tested for cell culture).
Viral vector preparation
The original virus plasmids of the 3rd generation are derived from the lab of Inder Verma (The Salk Institute for Biological Studies, Laboratory of Genetics, La Jolla, CA, USA). The lentivector system consists of two major parts: the vector and the packaging constructs. The used lentivector rrl-CMV-eGFP (Figure 1A) contains a CMV-driven eGFP expression cassette. The promoter/enhancer sequences in the U3 region of the 3' LTR were deleted to generate self-inactivating (SIN) vectors . The used oncoretroviral vector pCLMFG-GFP (Figure 4B) is based on MoMLV with an eGFP expression cassette driven by the MoMLV-LTR . The packaging system used for LV production was described in detail previously . Oncoretroviral particles were produced with the CMV-gag/pol packaging plasmid  and for pseudotyping either VSV.G or ecotropic envelope was used.
Production of recombinant virus
The production of LVs was performed as described previously . Briefly, HEK 293T cells were seeded on poly-L-lysine coated 150 cm2 cell culture dishes (BD Falcon, Franklin Lakes, NJ, USA) or 5 chamber cell stacks (surface area in sum 3180 cm2; Corning Incorporated, Lowell, MA, USA) in DMEM (Invitrogen, Darmstadt, Germany), supplemented with 10% fetal calf serum (Biochrom, Berlin, Germany), 100 U/ml penicillin G/100 μg/ml streptomycin (Pen/Strep; Biochrom, Berlin, Germany) and incubated at 10% CO2 and 37°C. Cells were transfected at ~50% confluency by calciumphosphate transfection with 22.5 μg lentivector, 14.6 μg pMDLg/pRRE, 5.7 μg RSV-rev and 7.9 μg pMD.G (VSV.G) per 150 cm2 cell culture dish. Amounts for cell factories were calculated according to the surface area (one 5 chamber cell stack is equivalent to 21.2 150 cm2 cell culture dishes). For production of oncoretroviral vectors transfection was performed using 25 μg retroviral vector pCLMFG-GFP, 12.5 μg pMD.G or CMV-ecotrope and 25 μg CMV gag/pol per 150 cm2 cell culture dish. For transfection, cells were cultured at 3% CO2 and 37°C over night. On the next morning, the medium was replaced by 20 ml fresh supplemented DMEM per 150 cm2 dish and 350 ml per cell factory. For analysis of protein content medium was replaced by serum free medium (HyClone SFM4MegaVir, Thermo Fisher Scientific, Waltham, MA, USA or Panserin 608, PAN Biotech, Aidenbach, Germany), supplemented with Pen/Strep. Cells were cultured again at 10% CO2 and 37°C.
Purification of recombinant virus
For purification of viral vectors, cell culture SN was collected 24 h after adding fresh medium. To remove cell debris the SN was filtered either using a bottle-top filter (SFCA, 0.45 μm, Nalgene, Thermo Fisher Scientific, Waltham, MA, USA) or the Sartopore 2 150-filter (PES, 0.45 μm-0.2 μm, Sartorius Stedim Biotech, Goettingen, Germany).
The components and buffers necessary for the purification using MA/UF are commercially available as LentiSELECT kits for different starting volumes of cell culture SN (40 ml: LentiSELECT40; 500 ml: LentiSELECT500; 1,000 ml: LentiSELECT1000). The purification procedure was performed according to the manufacturer's manual (Sartorius Stedim Biotech, Goettingen, Germany).
The UC protocol was described previously . Briefly, the filtered solution was transferred to centrifugation tubes and centrifuged in an ultra-centrifuge (Optima L-100 XP, Beckman Coulter Incorporated, Brea, CA, USA) with SW32Ti rotor (Beckman Coulter Incorporated, Brea, CA, USA) for two hours at 19,400 rpm and 17°C. Subsequently, virus pellets were resuspended in HBSS (Invitrogen, Darmstadt, Germany) and combined. The pre-concentrated suspension was transferred into a centrifuge tube and layered on top of a 2 ml 20% (w/v) sucrose cushion. The tubes were centrifuged using a SW55 rotor (Beckman Coulter Incorporated, Brea, CA, USA) for 2 hours at 21,000 rpm at 17°C. The pellet was resuspended in an appropriate volume of HBSS. The tube was vortexed for 45 minutes at 1,400 rpm and 17°C, followed by a short centrifugation step (3 s, 16,000 g) to pellet debris. Finally, the opaque SN was transferred to a new tube.
For both methods, samples were taken from every purification step and used for the transduction of cells (see also analysis of viral titer) or stored at -80°C for further analysis.
Analysis of viral titer
The biological titer of the LVs carrying the eGFP reporter was analyzed by transduction of HEK 293T cells followed by flow cytometry and IP/ml were calculated as previously described . For analyzing the physical titers of the LV containing solutions either the HIV-1 p24 Antigen ELISA from Zeptometrix Corporation (Buffalo, NY, USA) was used to measure the amount of the lentiviral p24 capsid protein according to the manufacturer's instructions or QRTPCR was applied to determine the viral RNA genome . For calculating the viral particles per ml (VP/ml) from p24 concentration the following term was used according to manufacturer's manual: VP/ml = pg p24/ml × 10,000. Measurements were each done from different dilutions of LV preparations. To establish a calibration curve for QRTPCR measurements the lentiviral plasmid rrl-CMV-GFP (Figure 1A) of known concentration (measured by spectrophotometry) was used and standards were generated by applying 10-fold serial dilutions. The number of DNA molecules was each determined by including molecular weight of the plasmid, Avogadro constant and dilution factor. The plasmid was amplified by QRTPCR using specific TaqMan® primers for lateRT (for: 5'-TGTGTGCCCGTCTGTTGTGT-3'; rev: 5'-GAGTCCTGCGTCGAGAGAGC-3') and lateRT probe (5'-FAM-CAGTGGCGCCCGAACAGGGA-BHQ1-3'). Ct values measured were plotted against the number of plasmid DNA molecules and a standard curve was generated (Additional file 5, Figure S5). Ct values were determined at least in triplet. For measurement of samples RNA was isolated from the concentrated LV preparations by use of mirVana™ miRNA Isolation Kit according to the manufacturer's instructions (Applied Biosystems, Carlsbad, CA, USA). RNA was transcribed into cDNA using Transcriptor First Strand cDNA Synthesis Kit from Roche Diagnostics (Mannheim, Germany) according to the manual. QRTPCR was then performed with TaqMan® probe and primers as described before. By using the calibration curve the viral particles per ml were calculated from the Ct values considering the diploid lentiviral RNA genome. Measurements were each done in triplet from three different dilutions of LV preparations.
In case of oncoretroviral particles the C-type RT-activity kit from Cavidi AB (Uppsala, Sweden) was used to analyze the activity of viral reverse transcriptase. Procedure was performed from different sample dilutions according to the manufacturer's manual. Reverse transcriptase activity was measured colorimetric in mu/ml.
Protein gel electrophoresis and Western blot analysis
For analysis of protein content LV containing fractions were loaded onto SDS-protein gel and coomassie blue stained . For detecting viral particles via Western blot analysis antibody against lentiviral capsid protein p24 was used. Viral particles containing fractions were applied to SDS-protein gel and immunoblotting on a PVDF-membrane was performed. Blocking of membrane was achieved with 5% (w/v) skimmed milk powder in PBS (phosphate buffered saline). Polyclonal antibody to HIV1 p24 (abcam, Cambridge, UK) was applied 1:2,000 in TBS (Tris-buffered saline) with 1% (v/v) Tween20 (TBST) for 2 h at room temperature. After washing, peroxidase-conjugated second antibody Anti-Rabbit IgG (0.8 mg/ml; dianova, Hamburg, Germany) was used 1:10,000 in TBST (1 h at room temperature). For imaging, chemiluminescent substrate for horseradish peroxidase (Thermo Fisher Scientific, Waltham, MA, USA) was applied.
Agarose gel electrophoresis
For detection of coeluted DNA LV containing fractions were loaded onto 0.7% (w/v) agarose gel and electrophoresis was performed in 1x TBE (Tris/borate/EDTA) buffer. The gel was stained with ethidium bromide and analyzed using a gel documentation system .
Images of purified viral particles were made using electron microscopy with negative staining procedure. The viral particles were mixed with 1% (v/v) glutaraldehyde solution and a droplet was placed on parafilm for 10 min. A formvar covered 200 mesh grid coated with carbon (Plano GmbH, Wetzlar, Germany) was placed on the droplet for 5 min. Remaining solution was soaked with a filter paper. The grid was then placed on a droplet of phosphotungstic acid for 30 min and excess liquid was again soaked with a filter paper. After drying, the grid was put into the transmission electron microscope Philips CM 10 with digital imaging analySiS from SIS (Olympus Europa GmbH, Hamburg, Germany) and images were taken.
We thank Tanja Stevens, Institute of Pharmacology and Toxicology, University of Bonn, Germany for expert technical assistance. For performing electron microscopy and providing the images we are very thankful to Joerg Bedorf, Institute of Pathology, University of Bonn, Germany. For intellectual input to the study we are grateful to Noushin Delmdahl, Sartorius Stedim Biotech GmbH, Goettingen, Germany.
- Verma IM, Weitzman MD: Gene therapy: twenty-first century medicine. Annu Rev Biochem. 2005, 74: 711-738. 10.1146/annurev.biochem.74.050304.091637.View ArticleGoogle Scholar
- Goff SP: Retroviridae: the viruses and their replication. Fields Virology. Edited by: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE. 2001, Philadelphia, Lippincott-Raven Publishers, 2: 1871-1939. 4Google Scholar
- Desrosiers RC: Nonhuman lentiviruses. Fields Virology. Edited by: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE. 2001, Philadelphia, Lippincott-Raven Publishers, 2: 2095-2121. 4Google Scholar
- Curran MA, Nolan GP: Nonprimate lentiviral vectors. Curr Top Microbiol Immunol. 2002, 261: 75-105.Google Scholar
- Russell DW, Miller AD: Foamy virus vectors. J Virol. 1996, 70 (1): 217-222.Google Scholar
- Cornetta K, Matheson L, Ballas C: Retroviral vector production in the National Gene Vector Laboratory at Indiana University. Gene Ther. 2005, 12 (Suppl 1): S28-35.View ArticleGoogle Scholar
- Moloney JB: Biological studies on a lymphoid-leukemia virus extracted from sarcoma 37. I. Origin and introductory investigations. J Natl Cancer Inst. 1960, 24: 933-951.Google Scholar
- Markowitz D, Goff S, Bank A: Construction of a safe and efficient retrovirus packaging cell line. Adv Exp Med Biol. 1988, 241: 35-40.View ArticleGoogle Scholar
- Beer C, Meyer A, Muller K, Wirth M: The temperature stability of mouse retroviruses depends on the cholesterol levels of viral lipid shell and cellular plasma membrane. Virology. 2003, 308 (1): 137-146. 10.1016/S0042-6822(02)00087-9.View ArticleGoogle Scholar
- Higashikawa F, Chang LJ: Kinetic analyses of stability of simple and complex retroviral vectors. Virology. 2001, 280 (1): 124-131. 10.1006/viro.2000.0743.View ArticleGoogle Scholar
- Rodrigues T, Carrondo MJ, Alves PM, Cruz PE: Purification of retroviral vectors for clinical application: biological implications and technological challenges. J Biotechnol. 2007, 127 (3): 520-541. 10.1016/j.jbiotec.2006.07.028.View ArticleGoogle Scholar
- Yee JK, Friedmann T, Burns JC: Generation of high-titer pseudotyped retroviral vectors with very broad host range. Methods Cell Biol. 1994, 43 (Pt A): 99-112.View ArticleGoogle Scholar
- Burns JC, Friedmann T, Driever W, Burrascano M, Yee JK: Vesicular stomatitis virus G glycoprotein pseudotyped retroviral vectors: concentration to very high titer and efficient gene transfer into mammalian and nonmammalian cells. Proc Natl Acad Sci USA. 1993, 90 (17): 8033-8037. 10.1073/pnas.90.17.8033.View ArticleGoogle Scholar
- Friedmann T, Yee JK: Pseudotyped retroviral vectors for studies of human gene therapy. Nat Med. 1995, 1 (3): 275-277. 10.1038/nm0395-275.View ArticleGoogle Scholar
- Pfeifer A, Verma IM: Virus vectors and their application. Fields Virology. Edited by: Howley PM, Knipe DM, Griffin D, Lamb RA, Martin A, Roizman B, Straus SE. 2001, Philadelphia: Lippincott-Raven, 469-491.Google Scholar
- Dull T, Zufferey R, Kelly M, Mandel RJ, Nguyen M, Trono D, Naldini L: A third-generation lentivirus vector with a conditional packaging system. J Virol. 1998, 72 (11): 8463-8471.Google Scholar
- Naldini L, Blomer U, Gallay P, Ory D, Mulligan R, Gage FH, Verma IM, Trono D: In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science. 1996, 272 (5259): 263-267. 10.1126/science.272.5259.263.View ArticleGoogle Scholar
- Scherr M, Battmer K, Eder M, Schule S, Hohenberg H, Ganser A, Grez M, Blomer U: Efficient gene transfer into the CNS by lentiviral vectors purified by anion exchange chromatography. Gene Ther. 2002, 9 (24): 1708-1714. 10.1038/sj.gt.3301848.View ArticleGoogle Scholar
- Slepushkin V, Chang N, Cohen R, Gan Y, Jiang B, Deausen E, Berlinger D, Binder G, Andre K, Humeau L, Dropulic B: Large-scale purification of a lentiviral vector by size exclusion chromatography or Mustang Q ion exchange capsule. BioProcessing J. 2003, 89-95.Google Scholar
- Pfeifer A, Kessler T, Yang M, Baranov E, Kootstra N, Cheresh DA, Hoffman RM, Verma IM: Transduction of liver cells by lentiviral vectors: analysis in living animals by fluorescence imaging. Mol Ther. 2001, 3 (3): 319-322. 10.1006/mthe.2001.0276.View ArticleGoogle Scholar
- Pfeifer A, Hofmann A: Lentiviral transgenesis. Methods Mol Biol. 2009, 530: 391-405. 10.1007/978-1-59745-471-1_21.View ArticleGoogle Scholar
- Delenda C, Gaillard C: Real-time quantitative PCR for the design of lentiviral vector analytical assays. Gene Ther. 2005, 12 (Suppl 1): S36-50.View ArticleGoogle Scholar
- Lizee G, Aerts JL, Gonzales MI, Chinnasamy N, Morgan RA, Topalian SL: Real-time quantitative reverse transcriptase-polymerase chain reaction as a method for determining lentiviral vector titers and measuring transgene expression. Hum Gene Ther. 2003, 14 (6): 497-507. 10.1089/104303403764539387.View ArticleGoogle Scholar
- Sastry L, Xu Y, Cooper R, Pollok K, Cornetta K: Evaluation of plasmid DNA removal from lentiviral vectors by benzonase treatment. Hum Gene Ther. 2004, 15 (2): 221-226. 10.1089/104303404772680029.View ArticleGoogle Scholar
- Sakuma T, Ravin SS, Tonne JM, Thatava T, Ohmine S, Takeuchi Y, Malech HL, Ikeda Y: Characterization of retroviral and lentiviral vectors pseudotyped with XMRV envelope glycoprotein. Hum Gene Ther. 2010, 21 (12): 1665-73. 10.1089/hum.2010.063.View ArticleGoogle Scholar
- Auricchio A, Kobinger G, Anand V, Hildinger M, O'Connor E, Maguire AM, Wilson JM, Bennett J: Exchange of surface proteins impacts on viral vector cellular specificity and transduction characteristics: the retina as a model. Hum Mol Genet. 2001, 10 (26): 3075-3081. 10.1093/hmg/10.26.3075.View ArticleGoogle Scholar
- Pichlmair A, Diebold SS, Gschmeissner S, Takeuchi Y, Ikeda Y, Collins MK, Reise Sousa C: Tubulovesicular structures within vesicular stomatitis virus G protein-pseudotyped lentiviral vector preparations carry DNA and stimulate antiviral responses via Toll-like receptor 9. J Virol. 2007, 81 (2): 539-547. 10.1128/JVI.01818-06.View ArticleGoogle Scholar
- Naviaux RK, Costanzi E, Haas M, Verma IM: The pCL vector system: rapid production of helper-free, high-titer, recombinant retroviruses. J Virol. 1996, 70 (8): 5701-5705.Google Scholar
- Bess JW, Gorelick RJ, Bosche WJ, Henderson LE, Arthur LO: Microvesicles are a source of contaminating cellular proteins found in purified HIV-1 preparations. Virology. 1997, 230 (1): 134-144. 10.1006/viro.1997.8499.View ArticleGoogle Scholar
- Seppen J, Barry S, Lam GM, Ramesh N, Osborne WR: Retroviral preparations derived from PA317 packaging cells contain inhibitors that copurify with viral particles and are devoid of viral vector RNA. Hum Gene Ther. 2000, 11 (5): 771-775. 10.1089/10430340050015662.View ArticleGoogle Scholar
- Hughes C, Galea-Lauri J, Farzaneh F, Darling D: Streptavidin paramagnetic particles provide a choice of three affinity-based capture and magnetic concentration strategies for retroviral vectors. Mol Ther. 2001, 3 (4): 623-630. 10.1006/mthe.2001.0268.View ArticleGoogle Scholar
- Segura MM, Kamen A, Trudel P, Garnier A: A novel purification strategy for retrovirus gene therapy vectors using heparin affinity chromatography. Biotechnol Bioeng. 2005, 90 (4): 391-404. 10.1002/bit.20301.View ArticleGoogle Scholar
- Ye K, Jin S, Ataai MM, Schultz JS, Ibeh J: Tagging retrovirus vectors with a metal binding peptide and one-step purification by immobilized metal affinity chromatography. J Virol. 2004, 78 (18): 9820-9827. 10.1128/JVI.78.18.9820-9827.2004.View ArticleGoogle Scholar
- Yamada K, McCarty DM, Madden VJ, Walsh CE: Lentivirus vector purification using anion exchange HPLC leads to improved gene transfer. Biotechniques. 2003, 34 (5): 1074-1078. 1080Google Scholar
- Kutner RH, Puthli S, Marino MP, Reiser J: Simplified production and concentration of HIV-1-based lentiviral vectors using HYPERFlask vessels and anion exchange membrane chromatography. BMC Biotechnol. 2009, 9: 10-10.1186/1472-6750-9-10.View ArticleGoogle Scholar
- Kutner RH, Zhang XY, Reiser J: Production, concentration and titration of pseudotyped HIV-1-based lentiviral vectors. Nat Protoc. 2009, 4 (4): 495-505. 10.1038/nprot.2009.22.View ArticleGoogle Scholar
- Rodrigues T, Carvalho A, Roldao A, Carrondo MJ, Alves PM, Cruz PE: Screening anion-exchange chromatographic matrices for isolation of onco-retroviral vectors. J Chromatogr B Analyt Technol Biomed Life Sci. 2006, 837 (1-2): 59-68. 10.1016/j.jchromb.2006.03.061.View ArticleGoogle Scholar
- Transfiguracion J, Jaalouk DE, Ghani K, Galipeau J, Kamen A: Size-exclusion chromatography purification of high-titer vesicular stomatitis virus G glycoprotein-pseudotyped retrovectors for cell and gene therapy applications. Hum Gene Ther. 2003, 14 (12): 1139-1153. 10.1089/104303403322167984.View ArticleGoogle Scholar
- Cheryan M: Ultrafiltration and microfiltration handbook. 1998, Urbana, Illinois, USA: Technomic Publishing Company, 245-267.Google Scholar
- Andreadis ST, Roth CM, Le Doux JM, Morgan JR, Yarmush ML: Large-scale processing of recombinant retroviruses for gene therapy. Biotechnol Prog. 1999, 15 (1): 1-11. 10.1021/bp980106m.View ArticleGoogle Scholar
- Cavazzana-Calvo M, Payen E, Negre O, Wang G, Hehir K, Fusil F, Down J, Denaro M, Brady T, Westerman K, et al: Transfusion independence and HMGA2 activation after gene therapy of human beta-thalassaemia. Nature. 467 (7313): 318-322.Google Scholar
- Kuroda H, Kutner RH, Bazan NG, Reiser J: A comparative analysis of constitutive and cell-specific promoters in the adult mouse hippocampus using lentivirus vector-mediated gene transfer. J Gene Med. 2008, 10 (11): 1163-1175. 10.1002/jgm.1249.View ArticleGoogle Scholar
- Segura MM, Kamen A, Garnier A: Downstream processing of oncoretroviral and lentiviral gene therapy vectors. Biotechnol Adv. 2006, 24 (3): 321-337. 10.1016/j.biotechadv.2005.12.001.View ArticleGoogle Scholar
- Lesch HP, Laitinen A, Peixoto C, Vicente T, Makkonen KE, Laitinen L, Pikkarainen JT, Samaranayake H, Alves PM, Carrondo MJ, Yla-Herttuala S, Airenne KJ: Production and purification of lentiviral vectors generated in 293T suspension cells with baculoviral vectors. Gene Ther. 2011Google Scholar
- Kahl CA, Marsh J, Fyffe J, Sanders DA, Cornetta K: Human immunodeficiency virus type 1-derived lentivirus vectors pseudotyped with envelope glycoproteins derived from Ross River virus and Semliki Forest virus. J Virol. 2004, 78 (3): 1421-1430. 10.1128/JVI.78.3.1421-1430.2004.View ArticleGoogle Scholar
- Sena-Esteves M, Tebbets JC, Steffens S, Crombleholme T, Flake AW: Optimized large-scale production of high titer lentivirus vector pseudotypes. J Virol Methods. 2004, 122 (2): 131-139. 10.1016/j.jviromet.2004.08.017.View ArticleGoogle Scholar
- Follenzi A, Ailles LE, Bakovic S, Geuna M, Naldini L: Gene transfer by lentiviral vectors is limited by nuclear translocation and rescued by HIV-1 pol sequences. Nat Genet. 2000, 25 (2): 217-222. 10.1038/76095.View ArticleGoogle Scholar
- Sambrook J, Russell DW: Molecular Cloning - A Laboratory Manual. 2001, New York: Cold Spring Harbor Laboratory PressGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.