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Table 3 Quantitative analysis of total cleavage percentage P of 3×pen aRNA by Pen17zyme1B and Pen17zyme2

From: DNAzyme-mediated recovery of small recombinant RNAs from a 5S rRNA-derived chimera expressed in Escherichia coli

Molar ratio of 3×pen aRNA: Pen17zyme1B: Pen17zyme2

Reaction time (hours)

71-nt final product yield related to the initial 3×pen aRNA amount

137-nt semi-product yield related to the initial 3×pen aRNA amount

P (Total cleavage percentage)

1:1:1

17

30%

15%

45%

1:10:1

17

39%

16%

55%

1:10:2

17

42%

15%

57%

1:10:1

40

70%

22%

92%

1:10:10

40

77%

23%

100%

1:10:10

72

90%

10%

100%

  1. Cleavage reactions were performed under conditions described in legend to Figure 2 except for the reaction time and 3×pen aRNA: DNazymes molar ratio, which were as indicated above.