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Table 1 Cytotoxic T-lymphocyte epitopes identified

From: Use of immunoinformatics and the simulation approach to identify Helicobacter pylori epitopes to design a multi-epitope subunit vaccine for B- and T-cells

Protein (GenBank ID)

Residue no

Peptide sequence

MHC binding affinity

Rescale binding affinity

C-terminal cleavage affinity

Transport affinity

Prediction score

MHC-I binding

ML score

AlgPred2 prediction

APO (ACX97396.1)

1

HSANFSTSY

0.7246

3.0765

0.9736

2.939

3.3694

Yes

0.31

Allergen

22

YVNAVLDAY

0.3384

1.437

0.735

2.996

1.697

Yes

0.32

Allergen

34

FSDFTLDDF

0.3589

1.5237

0.2645

2.281

1.6774

Yes

0.34

Allergen

82

YSDFTYLLP

0.371

1.5751

0.0253

0.081

1.583

Yes

0.38

Allergen

62

LSAQNLKKY

0.3036

1.2892

0.4645

2.881

1.503

Yes

0.32

Allergen

97

ALVYGVLFY

0.2362

1.003

0.9535

3.175

1.3048

Yes

0.28

Non-allergen

1

GVLFYLLLY

0.1966

0.8348

0.9298

2.85

1.1168

Yes

0.3

Non-allergen

42

FTFRPLICY

0.1862

0.7908

0.9743

2.781

1.076

Yes

0.32

Allergen

82

TLQRTLLKY

0.181

0.7683

0.967

2.746

1.0507

Yes

0.31

Allergen

34

LVPDSFFSY

0.1726

0.733

0.9773

2.996

1.0294

Yes

0.34

Allergen

92

IVVLIALVY

0.1673

0.7103

0.6759

3.212

0.9723

Yes

0.27

Non-allergen

18

VSSVYVNAV

0.1889

0.8022

0.351

0.308

0.8702

Yes

0.32

Allergen

59

NSAFALGFF

0.1663

0.706

0.0585

2.761

0.8528

Yes

0.35

Allergen

LeoA (ACX97803.1)

113

FSDLICQLL

0.2635

1.1187

0.9296

0.672

1.2917

Yes

0.34

Allergen

104

NLKEFITRY

0.1663

0.706

0.9786

2.988

1.0022

Yes

0.22

Non-allergen

IceA1 (AAL59391.1)

128

VSDSNTQTF

0.466

1.9786

0.8282

2.593

2.2325

Yes

0.32

Allergen

166

ATKIPGNYY

0.2931

1.2443

0.9723

2.906

1.5355

Yes

0.46

Allergen

25

SAIEFVGKY

0.176

0.7472

0.9769

3.146

1.051

Yes

0.47

Allergen

165

DATKIPGNY

0.1545

0.6561

0.9429

2.52

0.9235

Yes

0.42

Allergen

108

NSENAQIEI

0.1694

0.7191

0.7521

0.438

0.8539

Yes

0.32

Allergen

182

EYDGCVGCY

0.1264

0.5366

0.9674

2.963

0.8298

Yes

0.42

Allergen

214

YGEGYQIGY

0.1361

0.578

0.8502

2.464

0.8288

Yes

0.43

Allergen

IceA2 (AAG49536.1)

84

YSFVLNQNY

0.5255

2.2314

0.8765

3.005

2.5131

 

0.31

Allergen

207

LSLNANEVY

0.4015

1.7049

0.9707

2.848

1.9929

 

0.33

Allergen

24

SMNYIGSKY

0.3506

1.4885

0.9292

3.137

1.7848

 

0.24

Non-allergen

175

KVANTASVY

0.2678

1.1369

0.9308

3.048

1.4289

 

0.24

Non-allergen

178

NTASVYGAF

0.2666

1.1321

0.3672

2.721

1.3232

 

0.24

Non-allergen

76

VISNDLEYY

0.2121

0.9005

0.8903

3.212

1.1947

 

0.24

Non-allergen

154

SQNIDNHSY

0.2084

0.8847

0.9431

3.007

1.1766

 

0.37

Allergen

156

NIDNHSYYF

0.2047

0.8693

0.9299

2.475

1.1325

 

0.37

Allergen

75

KVISNDLEY

0.1832

0.7779

0.8021

3.38

1.0672

 

0.37

Allergen

308

ETEIKNILK

0.2192

0.9308

0.4751

0.149

1.0095

 

0.37

Allergen

247

HLLNTIAAY

0.1594

0.6768

0.9698

2.819

0.9632

 

0.36

Allergen

133

FSETNAQKI

0.1936

0.8221

0.1326

0.284

0.8562

 

0.25

Non-allergen

112

VALKKGFIY

0.1303

0.5531

0.9487

3.111

0.851

 

0.28

Non-allergen

313

NILKKYGAY

0.1312

0.557

0.8046

3.209

0.8381

 

0.3

Non-allergen

124

SLGGSSRQY

0.1113

0.4727

0.9647

2.782

0.7565

 

0.24

Non-allergen