Table 1 Strain identification using ONT long reads with different assembly and read correction tools as predicted by BLAST + tool
Sample | Strain |
|---|---|
Barcode 01 | Escherichia coli O157:H7 str. EDL933 |
Barcode 02 | Escherichia coli str. K-12 substr. W3110 |
Barcode 03 | Escherichia coli O157:H7 str. EDL933 |
Barcode 04 | Escherichia coli CFT073 |
Barcode 06 | Escherichia coli O157:H7 str. EDL933 |
Barcode 08 | Escherichia coli str. K-12 substr. W3110 |
Barcode 09 | Escherichia coli O157:H7 str. EDL933 |
Barcode 11 | Escherichia coli O157:H7 str. EDL933 |
Barcode 12 | Escherichia coli O157:H7 str. EDL933 |