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Fig. 3 | BMC Biotechnology

Fig. 3

From: The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing

Fig. 3

Heatmap presenting antimicrobial resistance identification by staramr (ResFinder) of nine clinical E. coli isolates using Flye, Canu, Wtdbg2 and NECAT as read assemblers with Medaka, NextPolish and Racon read correction tools. AMP = ampicillin, AMC/C’ = amoxicillin/clavulanic acid, Cfx = cefoxitin, CRO = ceftriaxone, CIP = ciprofloxacin, ERY = erythromycin, AZM = azithromycin, KAN = kanamycin, L = lincomycin, STR = streptomycin, TET = tetracyclin, TMP = trimethoprim. Staramr classified the presence of the resistance genes to 100% identity, > 99% identity, and no hits based to the corresponding colors

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BMC Biotechnology

ISSN: 1472-6750

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