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Table 2 Indexes of codon usage bias in 11 samples representing 6 species

From: Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium

  E. japonica-1 E. japonica-2 PPY-1 PPY-2 PPY-3 SP E. cavaleriei E. deflexa E. fragrans D. turbinata M. grandiflora
PCG length (bp) 78,612 78,612 78,612 78,612 78,612 78,612 78,630 78,630 78,600 77,301 77,811
Codon Number 26,204 26,204 26,204 26,204 26,204 26,204 26,210 26,210 26,200 25,767 26,122
Amino acid No 26,120 26,120 26,120 26,120 26,120 26,120 26,126 26,126 26,116 25,682 26,038
SC No 25,052 25,052 25,052 25,052 25,052 25,052 25,058 25,058 25,049 24,632 24,959
ENC 49.52 49.52 49.52 49.52 49.52 49.52 49.51 49.52 49.52 49.33 50.66
CAI 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.166 0.165 0.165 0.167
CBI − 0.106 − 0.106 − 0.106 − 0.106 − 0.106 − 0.106 − 0.106 − 0.106 − 0.107 − 0.114 − 0.096
FOP 0.350 0.350 0.350 0.350 0.350 0.350 0.350 0.350 0.350 0.346 0.357
GC content (%) 0.378 0.378 0.378 0.378 0.378 0.378 0.378 0.378 0.378 0.375 0.392
GC3 content (%) 0.267 0.267 0.267 0.267 0.267 0.267 0.267 0.267 0.267 0.264 0.288