Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium

BMC Biotechnology

Table 2 Indexes of codon usage bias in 11 samples representing 6 species

	E. japonica-1	E. japonica-2	PPY-1	PPY-2	PPY-3	SP	E. cavaleriei	E. deflexa	E. fragrans	D. turbinata	M. grandiflora
PCG length (bp)	78,612	78,612	78,612	78,612	78,612	78,612	78,630	78,630	78,600	77,301	77,811
Codon Number	26,204	26,204	26,204	26,204	26,204	26,204	26,210	26,210	26,200	25,767	26,122
Amino acid No	26,120	26,120	26,120	26,120	26,120	26,120	26,126	26,126	26,116	25,682	26,038
SC No	25,052	25,052	25,052	25,052	25,052	25,052	25,058	25,058	25,049	24,632	24,959
ENC	49.52	49.52	49.52	49.52	49.52	49.52	49.51	49.52	49.52	49.33	50.66
CAI	0.166	0.166	0.166	0.166	0.166	0.166	0.166	0.166	0.165	0.165	0.167
CBI	− 0.106	− 0.106	− 0.106	− 0.106	− 0.106	− 0.106	− 0.106	− 0.106	− 0.107	− 0.114	− 0.096
FOP	0.350	0.350	0.350	0.350	0.350	0.350	0.350	0.350	0.350	0.346	0.357
GC content (%)	0.378	0.378	0.378	0.378	0.378	0.378	0.378	0.378	0.378	0.375	0.392
GC₃ content (%)	0.267	0.267	0.267	0.267	0.267	0.267	0.267	0.267	0.267	0.264	0.288

ISSN: 1472-6750