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Table 1 Summary of cpDNA characteristics of 11 samples

From: Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium

  E. japonica-1 E. japonica-2 PPY-1 PPY-2 PPY-3 SP E. cavaleriei E. deflexa E. fragrans D. turbinata M. grandiflora
DNA concentration (ng/μL) 273.1 310.1 41.9 29.4 33.6 9.76 88 21.9 47.5 43.8 362.7
Coverage 309.71 ± 45.78 747.45 ± 99.19 60.02 ± 20.91 140.14 ± 28.56 188.80 ± 35.90 59.99 ± 20.96 505.66 ± 44.15 579.12 ± 94.80 492.26 ± 54.56 359.61 ± 71.08 258.53 ± 36.78
Size (bp) 159,115 159,156 159,155 159,156 159,156 159,202 159,270 159,393 159,177 163,250 159,690
Number of genes 112 112 112 112 112 112 112 112 112 113 112
Number of protien-coding genes 78 78 78 78 78 78 78 78 78 79 78
Number of tRNA genes 30 30 30 30 30 30 30 30 30 30 30
Number of rRNA genes 4 4 4 4 4 4 4 4 4 4 4
Overall GC content 36.70% 36.70% 36.70% 36.70% 36.70% 36.70% 36.70% 36.70% 31.00% 36.10% 39.3%
LSC length (bp) 87,222 87,223 87,222 87,223 87,223 87,271 87,250 87,401 87,330 90,907 87,776
IR length (bp) 26,326 26,326 26,326 26,326 26,326 26,325 26,335 26,330 26,317 26,497 26,580
SSC length (bp) 19,281 19,281 19,281 19,281 19,281 19,281 19,350 19,332 19,213 19,349 18,754
GC content in IR (%) 42.70% 42.70% 42.70% 42.70% 42.70% 42.70% 42.70% 42.70% 42.70% 42.80% 42.70%
Reference sequence KY085905, MN577877, NC034639 for cpDNA
MH711704, MG938044, MF096288, KX675082 for ITS/ITS2
MN577877 for cpDNA KJ170784, KP093136 for ITS/ITS2 MK920282 for cpDNA
MG938042, JQ392434 for ITS/ITS2
MN577877 for cpDNA MH246945, KP093137 for ITS/ITS2 NC042740 for cpDNA
AY096031 for ITS/ITS2
JN867587, NC020318, MN990594 for cpDNA