Table 1 Summary of cpDNA characteristics of 11 samples
From: Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium
| Â | E. japonica-1 | E. japonica-2 | PPY-1 | PPY-2 | PPY-3 | SP | E. cavaleriei | E. deflexa | E. fragrans | D. turbinata | M. grandiflora |
|---|---|---|---|---|---|---|---|---|---|---|---|
DNA concentration (ng/μL) | 273.1 | 310.1 | 41.9 | 29.4 | 33.6 | 9.76 | 88 | 21.9 | 47.5 | 43.8 | 362.7 |
Coverage | 309.71 ± 45.78 | 747.45 ± 99.19 | 60.02 ± 20.91 | 140.14 ± 28.56 | 188.80 ± 35.90 | 59.99 ± 20.96 | 505.66 ± 44.15 | 579.12 ± 94.80 | 492.26 ± 54.56 | 359.61 ± 71.08 | 258.53 ± 36.78 |
Size (bp) | 159,115 | 159,156 | 159,155 | 159,156 | 159,156 | 159,202 | 159,270 | 159,393 | 159,177 | 163,250 | 159,690 |
Number of genes | 112 | 112 | 112 | 112 | 112 | 112 | 112 | 112 | 112 | 113 | 112 |
Number of protien-coding genes | 78 | 78 | 78 | 78 | 78 | 78 | 78 | 78 | 78 | 79 | 78 |
Number of tRNA genes | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 |
Number of rRNA genes | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 |
Overall GC content | 36.70% | 36.70% | 36.70% | 36.70% | 36.70% | 36.70% | 36.70% | 36.70% | 31.00% | 36.10% | 39.3% |
LSC length (bp) | 87,222 | 87,223 | 87,222 | 87,223 | 87,223 | 87,271 | 87,250 | 87,401 | 87,330 | 90,907 | 87,776 |
IR length (bp) | 26,326 | 26,326 | 26,326 | 26,326 | 26,326 | 26,325 | 26,335 | 26,330 | 26,317 | 26,497 | 26,580 |
SSC length (bp) | 19,281 | 19,281 | 19,281 | 19,281 | 19,281 | 19,281 | 19,350 | 19,332 | 19,213 | 19,349 | 18,754 |
GC content in IR (%) | 42.70% | 42.70% | 42.70% | 42.70% | 42.70% | 42.70% | 42.70% | 42.70% | 42.70% | 42.80% | 42.70% |
Reference sequence | KY085905, MN577877, NC034639 for cpDNA MH711704, MG938044, MF096288, KX675082 for ITS/ITS2 | MN577877 for cpDNA KJ170784, KP093136 for ITS/ITS2 | MK920282 for cpDNA MG938042, JQ392434 for ITS/ITS2 | MN577877 for cpDNA MH246945, KP093137 for ITS/ITS2 | NC042740 for cpDNA AY096031 for ITS/ITS2 | JN867587, NC020318, MN990594 for cpDNA | |||||