Table 1 Model characteristics of iHL622 and comparison with template GEMs
From: Genome-scale insights into the metabolic versatility of Limosilactobacillus reuteri
Model | iHL622 | iNF517 | LbReuteri | iBT721 | iML1515 |
|---|---|---|---|---|---|
Organism | L. reuteri ATCC PTA 6475 | L.lactis MG1363 | L. reuteri JCM 1112 | L. plantarum WCFS1 | E. coli MG1655 |
Genes | 2019 | 2339 | 1943 | 3063 | 4243 |
   Included | 622 (31%) | 516 (22%) | 530 (27%) | 724 (24%) | 1516 (36%) |
Reactions | 869 | 754 | 714 | 778 | 2712 |
  Common with iHL622 | 869 | 483 | 531 | 392 | 509 |
  With GPRa | 709 (82%) | 541 (72%) | 606 (85%) | 528 (68%) | 2266 (86%) |
Internal | 644 | 530 | 507 | 538 | 1548 |
   Transport | 122 | 119 | 123 | 127 | 833 |
   Exchange | 103 | 105 | 84 | 113 | 331 |
Metabolites | 713 | 650 | 660 | 662 | 1877 |
   Unique | 605 | 545 | 561 | 549 | 1071 |
Biomass consistency | 1.00 | 0.83 | -b | -b | 1.00 |
MEMOTE Score | 80% | 60% | 57% | 38% | 68% |