Fig. 4
From: Genome-scale insights into the metabolic versatility of Limosilactobacillus reuteri
Characteristics of core- and pan-GEMs of 35 L. reuteri strains from different hosts. (a) Genome size shown in blue on the right, GEMs characteristics shown on the left. Green asterisks indicate the number of reactions, orange asterisks indicate the number of metabolites, and light blue asterisks indicate the number of genes in each GEM. These GEMs are grouped by host: herbivore, omnivore, and sourdough. The strains list in the y-axis are sorted in descending order by genome size in each group. (b,c,d) Upset plot of genes, reactions and metabolites between the pan-models of three groups. The total height of the bar indicates the union size of the corresponding group in the horizontal coordinate. In the final plotted bar, only appearing in one group is considered specific, appearing in all groups is considered common and appearing in two (between one and all) groups is considered dispensable. The common, dispensable and specific size from all combinations are shown