Fig. 4
From: Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha
Memote scores of iUL909 regarding quality of reactions, metabolites and annotation degree. The quality of the reconstruction is in total evaluated with 45 % (see also GitHub repository result file). The y-axis represents different model aspects pertaining to structural correctness and the degree of annotation. The consistency is evaluated according to stoichiometric consistency, mass and charge balance, metabolite connectivity and correct exchange reaction definitions. Because approximately 3% of the reactions are not fully balanced, the stoichiometric consistency is reduced and results in a 60% consistency performance. Annotations for metabolites, reactions and SBO-terms were added, however, the gene annotations available in the excel sheet could not integrated to the SBML file. Nonetheless, iUL909 was evaluated nearly double the annotation quality compared to the reference GSMM of iMT1026