A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

BMC Biotechnology

Table 1 Sequencing summary

Plasmid	Transgenic event	Raw data			Quality trimming (Quality 20)			Duplication removal
Plasmid	Transgenic event	No. of reads	Read length (bp)	Coverage (X)^a	Passing no	Passing length	%	Passing no	Passing length	%
Control	Illmi-WT	223,313,710	28,137,527,460	72	176,408,832	21,435,272,583	76	170,625,468	20,741,720,376	74
pSRT-Bt9	5	239,832,008	30,218,833,008	78	204,794,658	25,037,891,856	83	188,241,490	22,995,894,420	76
	30	166,881,634	21,027,085,884	54	138,820,046	16,967,747,284	81	133,943,766	16,376,472,378	78
	109	209,895,370	26,446,816,620	68	160,918,378	19,499,272,073	74	156,176,474	18,927,586,888	72

ISSN: 1472-6750