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Table 1 Sequencing summary

From: A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

Plasmid Transgenic event Raw data Quality trimming (Quality 20) Duplication removal
No. of reads Read length (bp) Coverage (X)a Passing no Passing length % Passing no Passing length %
Control Illmi-WT 223,313,710 28,137,527,460 72 176,408,832 21,435,272,583 76 170,625,468 20,741,720,376 74
pSRT-Bt9 5 239,832,008 30,218,833,008 78 204,794,658 25,037,891,856 83 188,241,490 22,995,894,420 76
30 166,881,634 21,027,085,884 54 138,820,046 16,967,747,284 81 133,943,766 16,376,472,378 78
109 209,895,370 26,446,816,620 68 160,918,378 19,499,272,073 74 156,176,474 18,927,586,888 72
  1. aRice genome coverage (estimated genome size: 389 Mb [30])