Table 1 Result of Agrobacterium and Arabidopsis genome resequencing using the two different DNA fragmentation methods
Species | Fragmentation method | Chromosome | Number of reads | Ratio of coverage (%) | Average coverage depth (time) |
|---|---|---|---|---|---|
Agrobacterium | REPLI-g/MspJI | Circular | 1,380,029 | 99.9 | 64.3 |
Linear | 1,219,389 | 99.9 | 77.8 | ||
Physical shearing | Circular | 546,292 | 99.8 | 27.4 | |
Linear | 496,662 | 99.9 | 34.1 | ||
Arabidopsis | REPLI-g/MspJI | 1 | 4,611,463 | 97.3 | 36.4 |
2 | 4,759,134 | 98 | 57.7 | ||
3 | 4,702,657 | 98.3 | 47.9 | ||
4 | 3,088,231 | 98 | 39.9 | ||
5 | 4,222,266 | 98 | 37.8 | ||
Physical shearing | 1 | 5,116,095 | 98.9 | 41.5 | |
2 | 6,143,569 | 99.5 | 75 | ||
3 | 6,083,236 | 99.5 | 62.4 | ||
4 | 3,776,130 | 99.5 | 49.3 | ||
5 | 4,980,370 | 99.4 | 45.1 |