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Table 1 Oligonucleotide primers used in this study

From: Homologous recombination-mediated cloning and manipulation of genomic DNA regions using Gateway and recombineering systems

Primer name

Sequence 5'-3'

Tc-5'-PmlNco

CACGTGCCATGGTTCTCATGTTTGACAGCTTATC

Tc-3'-PmlNsi

CACGTGAT GCATGGACTTCCGCGTTTCCAG

SpR-5'-HpaBspNhe

ATCGTTAACTCATGAGCTAGCCGTTCGTGAATACATGTTATAATA

SpR-3'-Hpa

ATCGTTAACTTATTTGCCGACTACCTTGGTGATCT

GFP-mu-5'-Bam

ATCGGATCCAAAACAATGGCTAGTAAAGGAGAAGAACTTTTCACTGGAGTTGTCCC

GFP-mu-3'-NotAvrBgl

GATATCGCGGCCGCCCTAGGTAGATCTTCCACCTCCACCTTTGTATAGTTCATCCATGCCATGTGTA

ABI3-5'-CDS-Rescue-3'-Test

CTCCTCCATGGTCATCTAACC

ABI3-3'-CDS-Rescue-5'-Test

GTACCCGAGTGTGCCACTTC

PAP85-Prom-Rescue-3'-Test

ACTTCCTAGGGTTGCTACTG

PAP85-Term-Rescue-5'-Test

ACCGGATGGTTTGGT TATGG

ABI3-L1-Rescue-5'-CDS1

agatctccggcgttggccgccacatgcaagcttttcatcgttgaagtggaCAAATACGCATACTGTTATCTGGCT

ABI3-L2-Rescue-3'-CDS1

tattacatatgtggctcatttcttgagtcgagcttacatatcgtttataaAACCTGATGTTCTGGGGAATATAG

ENTRY-L1

TTAGTTAGTTACTTAAGCTCGG

ENTRY-L2

TGAGACACGGGCCAGAGC

PAP85-Rescue-5'-Prom2

ttcctaccaccatgaccaaacttggaatcccgaaactccctcttcttgttTTGTCGTTTCCCGCCTTCAG

PAP85-Rescue-3'-Term2

atagctcgtattttttagcttatgtctaaaatacccctgagatcatgtggAACGTTCTCGAGGGGATCTTCTG

pCB-RB

CTGTGGTTGGCATGCACATA

tCUP2-Out

CGAGGTTAGACCTTCAGGAAATA

PAP85-Integ-Dest-5'3

acccattattgtcctcaaaaacaaacacatcaacaaaacaacaagaaaaaGATATCACAAGTTTGTACAAAAAAGC

PAP85-Integ-Dest-3'3

ttaaactcttaaactctttcctttcttaggactgtaaaaaagcattttcaGATATCACCACTTTGTACAAGAAAGC

PAP85-Dest-Integ-5'-Test

TGATGCGTACGAACACTC

Cm-5'-AS

ACGGTGGTATATCCAGTGATT

PAP85-Dest-Integ-3'-Test

GTTACATGCAGAGCG TTACC

C1

TTATACGCAAGGCGACAAGG

PAP85-S1

GCAGGGATCCT TGTTCCTTC

  1. 1Upper-case letters correspond to unique recognition sequences in pJM1 and lower-case letters correspond to 50 bp regions homologous to ABI3.
  2. 2Upper-case letters correspond to unique recognition sequences in pWY109 and pWY107 and lower-case letters correspond to 50 bp regions homologous to PAP85.
  3. 3Upper-case letters correspond to unique recognition sequences in the RfA-Destination cassette of pMW138-1 and lower-case letters correspond to 50 bp regions homologous to PAP85.