Table 2 Differentially-expressed, biofilm-related genes upon expression of HoxEFUYH in E. coli TG1 in complex medium at 37°C after 6 h. References indicate the relevant biofilm publication

ydfX

b1568

34.3

hypothetical protein

[31]

tnaL

b3707

24.3

tryptophanase leader peptide

[31, 34]

tnaA

b3708

13.9

tryptophanase

[31]

sdhC

b0721

10.6

succinate dehydrogenase membrane protein

[31, 32]

sdhD

b0722

9.2

succinate dehydrogenase membrane protein

[32, 34]

treB

b4240

9.2

subunit of EIITre

[34]

treC

b4239

6.1

trehalose-6-phosphate hydrolase

[31-33]

pspA

b1304

9.2

regulatory protein for the phage shock protein operon

[32]

pspB

b1305

8.0

stimulates PspC-mediated transcriptional activation of the psp operon

[32]

yhaN

b3109

8.6

hypothetical ORF

[31]

tdcC

b3116

8.6

threonine STP transporter

[32]

tdcD

b3115

8.0

propionate kinase/acetate kinase C

[32]

gltA

b0720

8.0

subunit of citrate synthase

[32]

yciD

b1256

8.0

subunit of Colicin S4 Transport System

[31]

gatA

b2094

6.1

subunit of EIIGat

[31, 34]

gatB

b2093

7.5

subunit of EIIGat

[31]

ibpB

b3686

6.5

small heat shock protein

[33, 34]

nmpC

b0553

6.1

outer membrane porin protein

[31, 34]

Mdh

b3236

5.7

subunit of malate dehydrogenase

[32]

sucC

b0728

5.3

succinyl-CoA synthetase, βsubunit

[32]

fumB

b4122

- 14.9

subunit of fumarase B

[31-33]

yigE

b3814

- 11.3

conserved protein

[31, 32]

ydeO

b1499

- 10.6

transcriptional activator

[31, 32]

yjjJ

b4385

- 9.2

conserved protein

[31, 32]

yihP

b3877

- 8.0

GPH transporter

[32, 33]

yjeN

b4157

- 8.0

conserved protein

[32]

yfjT

b2637

- 7.5

CP4-57 prophage predicted protein

[32]

yjhS

b4309

- 6.5

conserved protein

[32]

yghG

b2971

- 5.3

unknown function

[32, 33]

yicE

b3654

- 5.3

NCS2 transporter

[31, 32]

tort

b0994

- 3.0

unknown inducer

[32-34]