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Table 2 Differentially-expressed, biofilm-related genes upon expression of HoxEFUYH in E. coli TG1 in complex medium at 37°C after 6 h. References indicate the relevant biofilm publication

From: Inhibition of hydrogen uptake in Escherichia coli by expressing the hydrogenase from the cyanobacterium Synechocystissp. PCC 6803

Gene name b # Fold change Gene function Reference
ydfX b1568 34.3 hypothetical protein [31]
tnaL b3707 24.3 tryptophanase leader peptide [31, 34]
tnaA b3708 13.9 tryptophanase [31]
sdhC b0721 10.6 succinate dehydrogenase membrane protein [31, 32]
sdhD b0722 9.2 succinate dehydrogenase membrane protein [32, 34]
treB b4240 9.2 subunit of EIITre [34]
treC b4239 6.1 trehalose-6-phosphate hydrolase [31-33]
pspA b1304 9.2 regulatory protein for the phage shock protein operon [32]
pspB b1305 8.0 stimulates PspC-mediated transcriptional activation of the psp operon [32]
yhaN b3109 8.6 hypothetical ORF [31]
tdcC b3116 8.6 threonine STP transporter [32]
tdcD b3115 8.0 propionate kinase/acetate kinase C [32]
gltA b0720 8.0 subunit of citrate synthase [32]
yciD b1256 8.0 subunit of Colicin S4 Transport System [31]
gatA b2094 6.1 subunit of EIIGat [31, 34]
gatB b2093 7.5 subunit of EIIGat [31]
ibpB b3686 6.5 small heat shock protein [33, 34]
nmpC b0553 6.1 outer membrane porin protein [31, 34]
Mdh b3236 5.7 subunit of malate dehydrogenase [32]
sucC b0728 5.3 succinyl-CoA synthetase, βsubunit [32]
fumB b4122 - 14.9 subunit of fumarase B [31-33]
yigE b3814 - 11.3 conserved protein [31, 32]
ydeO b1499 - 10.6 transcriptional activator [31, 32]
yjjJ b4385 - 9.2 conserved protein [31, 32]
yihP b3877 - 8.0 GPH transporter [32, 33]
yjeN b4157 - 8.0 conserved protein [32]
yfjT b2637 - 7.5 CP4-57 prophage predicted protein [32]
yjhS b4309 - 6.5 conserved protein [32]
yghG b2971 - 5.3 unknown function [32, 33]
yicE b3654 - 5.3 NCS2 transporter [31, 32]
tort b0994 - 3.0 unknown inducer [32-34]