From: Detecting imbalanced expression of SNP alleles by minisequencing on microarrays
Fluorescence signal ratio | Difference in cDNA and gDNA ratios (p-value) | cDNA/gDNAc | |||
---|---|---|---|---|---|
SNPa | Methodb | cDNA | gDNA | ||
rs4331 ACE | I | 4.1 | 1.7 | 0.00095 | 2.4 (1.9–2.8) |
II | 0.94 | 0.33 | 0.0060 | 2.8 (1.8–4.0) | |
rs1042719 ADRB2 | I | 0.50 | 0.95 | 0.000025 | 0.54 (0.47–0.69) |
II | 0.33 | 0.47 | 0.0070 | 0.71 (0.67–0.75) | |
TM | 0.086 | 0.19 | <0.0001 | 0.47 (0.31–0.56) | |
MS | 0.48 | 0.99 | <0.0001 | 0.48 (0.34–0.62) | |
rs5351 EDNRB | I | 6.3 | 3.5 | 0.00014 | 1.8 (1.6–2.0) |
II | 8.7 | 5.6 | 0.0030 | 1.6 (1.4–1.8) | |
rs5925 LDLR | I | 0.87 | 1.0 | 0.33 | 0.85 (0.63–1.1) |
II | 0.37 | 0.27 | 0.029 | 1.4 (1.1–1.5) | |
TM | 3.3 | 1.4 | 0.15 | 2.4 (1.4–5.6) | |
MS | 0.36 | 0.28 | 0.027 | 1.3 (0.98–1.5) | |
rs5930 LDLR | I | 1.1 | 0.78 | 0.035 | 1.5 (1.1–1.9) |
II | 0.54 | 0.29 | 0.0030 | 1.8 (1.5–2.3) | |
rs1433099 LDLR | I | 2.0 | 2.0 | 0.66 | 0.96 (0.84–1.1) |
II | 0.57 | 0.46 | 0.33 | 1.2 (0.65–1.5) | |
TM | 1.0 | 0.49 | <0.0001 | 2.0 (1.9–2.1) | |
MS | 0.47 | 0.32 | 0.060 | 1.5 (1.0–2.0) |