CCGAGGTGGGCAGTCAATCAATCT
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DK633outerr
|
outer primer
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ACGCCATTTTGCAAGGCAT
|
DK637altouterf
|
outer primer
|
454-adaptor primers
| | |
Lowercase letters provide a multiplexing code to allow separate PCR reactions to be pooled and sequenced together
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GCCTCCCTCGCGCCATCAGagcTTTCTTGGGTAGTTTGCAGTTT
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DK621ACodeAGC
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‘A’ type, nested
|
GCCTCCCTCGCGCCATCAGtgaTTTCTTGGGTAGTTTGCAGTTT
|
DK621ACodeTGA
|
‘A’ type, nested
|
GCCTCCCTCGCGCCATCAGcagTTTCTTGGGTAGTTTGCAGTTT
|
DK621ACodeCAG
|
‘A’ type, nested
|
Type A primers are identical except for the 3 nt’s in small letters
|
GCCTTGCCAGCCCGCTCAGtactgacTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTActgaC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtacgatcTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAcgatC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtacagtcTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAcagtC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtagactcTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAgactC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtagcatcTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAgcatC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtacgtacTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAcgtaC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtagctacTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAgctaC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGtagtcacTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeTAgtcaC
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcactgagTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCActgaG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcacgatgTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAcgatG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcacagtgTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAcagtG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcagactgTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAgactG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcagcatgTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAgcatG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcacgtagTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAcgtaG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcagatcgTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAgatcG
|
‘B’ type, nested
|
GCCTTGCCAGCCCGCTCAGcagtcagTTGTACAAGAAAGCTGGGTAAG
|
DK622BCodeCAgtcaG
|
‘B’ type, nested
|
Type B primers are identical except the 7 nt’s in small letters.
|