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Table 1 The design of mouse Oct-4 targeting and negative control (random) molecular beacons*

From: Simultaneous detection of mRNA and protein stem cell markers in live cells

Beacon ID

Molecular Beacon Design

MB1

5'-Cy3-CGTCGCATACTCGAACCACATCCCGACG-BHQ2-3'

MB2

5'-Cy3-CAGCCCCTCCACCCACTTCTGGCTG-BHQ2-3'

MB3

5'-Cy3-CCGGTCATGTTCTTAAGGCTACCGG-BHQ2-3'

MB4

5'-Cy3-CGCAGTCCAGGTTCTCTTGTCTCTGCG-BHQ2-3'

MB5

5'-Cy3-CGGAGAGCCAGGTGTCCAGCCATCTCCG-BHQ2-3'

MB6

5'-Cy3-CCGGAGGGGCCTGGTGGAAAGATCCGG-BHQ2-3'

MB7

5'-Cy3-CCACAGAGCCCTGCTGACCCACTGTGG-BHQ2-3'

MB8

5'-Cy3-CAGGACCTAGTTCGCTTTCTCTTGTCCTG-BHQ2-3'

MB9

5'-Cy3-CGCAGCTTCTGGCGCCGGTTCTGCG-BHQ2-3'

MB10

5'-Cy3-CCGGAACATGTCCTGGGACTCCTCTTCCGG-BHQ2-3'

MB11

5'-Cy3-CGAGCGCATATCTCCTGAAGGGCTCG-BHQ2-3'

MB12

5'-Cy3-CGTGCCCCCAATACCTCTGAGCGCACG-BHQ2-3'

MB13

5'-Cy3-CCGTGGGATACAGCCCCCCCTGCACGG-BHQ2-3'

Random MB

5'-Cy3-CGACGCGACAAGCGCACCGATACGTCG-BHQ2-3'

  1. * The underline indicates the stem sequence. Abbreviation: MB, molecular beacon; BHQ, black hole quencher.