| Name | Repeat | Chr | Forward primer | Reverse primer | Amp/L (%) | Amp/A (%) | ADO (%) |
---|---|---|---|---|---|---|---|---|
Loci amplified by multiplex PCRs (1–90) | ||||||||
1 | D16MIT189 | AC | 16 | N/A | N/A | 70.0 | 45.0 | 71.4 |
2 | D9MIT201 | TG | 9 | N/A | N/A | 75.0 | 57.5 | 46.7 |
3 | D12MIT182 | TG | 12 | N/A | N/A | 75.0 | 42.5 | 86.7 |
4 | D4MIT203 | TG | 4 | N/A | N/A | 65.0 | 35.0 | 92.3 |
5 | D17MIT180 | TG | 17 | N/A | N/A | 80.0 | 45.0 | 87.5 |
6 | D1MIT316 | AC | 1 | N/A | N/A | 50.0 | 30.0 | 80.0 |
7 | D1MIT206 | TG | 1 | N/A | N/A | 65.0 | 45.0 | 61.5 |
8 | D9MIT250 | AC | 9 | N/A | N/A | 80.0 | 52.5 | 68.7 |
9 | D4MIT17 | TG | 4 | N/A | N/A | 80.0 | 57.5 | 56.2 |
10 | D5MIT425 | AC | 5 | N/A | N/A | 55.0 | 30.0 | 90.9 |
11 | D18MIT222 | TC | 18 | N/A | N/A | 85.0 | 85.0 | 0 |
12 | D4MIT18 | TG | 4 | N/A | N/A | 70.0 | 45.0 | 71.4 |
13 | D7MIT259 | AC | 7 | N/A | N/A | 75.0 | 42.5 | 86.6 |
14 | D10MIT213 | TG | 10 | N/A | N/A | 75.0 | 37.5 | 100 |
15 | D9MIT198 | TG | 9 | N/A | N/A | 70.0 | 47.5 | 64.3 |
16 | D10MIT95 | AC | 10 | N/A | N/A | 65.0 | 35.0 | 92.3 |
17 | D14MIT170 | TG | 14 | N/A | N/A | 60.0 | Â | Â |
18 | D19MIT88 | GA | 19 | N/A | N/A | 85.0 | 50.0 | 82.3 |
19 | D15MIT44 | AC | 15 | N/A | N/A | 25.0 | 15.0 | 80.0 |
20 | D5MIT146 | TG | 5 | N/A | N/A | 80.0 | 52.5 | 68.7 |
21 | D8MIT45 | AC | 8 | N/A | N/A | 85.0 | 50.0 | 82.3 |
22 | D15MIT159 | AC | 15 | N/A | N/A | 70.0 | 45.0 | 71.4 |
23 | D19MIT33 | TC | 19 | N/A | N/A | 80.0 | 62.5 | 43.7 |
24 | D6MIT36 | TG | 6 | N/A | N/A | 55.0 | 40.0 | 54.5 |
25 | D10MIT233 | AC | 10 | N/A | N/A | 80.0 | 47.5 | 81.2 |
26 | D1MIT132 | GA | 1 | N/A | N/A | 55.0 | 32.5 | 81.8 |
27 | D19MIT26 | TG | 19 | N/A | N/A | 60.0 | 35.0 | 83.3 |
28 | D6MIT284 | AC | 6 | N/A | N/A | 65.0 | 42.5 | 69.2 |
29 | D8MIT292 | AC | 8 | N/A | N/A | 70.0 | 42.5 | 78.5 |
30 | D8MIT120 | AC | 8 | N/A | N/A | 70.0 | 45.0 | 71.4 |
31 | D2MIT285 | TG | 2 | N/A | N/A | 55.0 | 40.0 | 54.5 |
32 | D11MIT285 | AC | 11 | N/A | N/A | 70.0 | 50.0 | 57.1 |
33 | D11MIT143 | AC | 11 | N/A | N/A | 80.0 | 50.0 | 75.0 |
34 | D1MIT102 | TG | 1 | N/A | N/A | 75.0 | 50.0 | 66.6 |
35 | D11MIT86 | TG | 11 | N/A | N/A | 80.0 | 42.5 | 93.7 |
36 | D2MIT242 | TG | 2 | N/A | N/A | 65.0 | 35.0 | 92.3 |
37 | D14MIT126 | AC | 14 | N/A | N/A | 90.0 | 57.5 | 72.2 |
38 | D14MIT174 | TG | 14 | N/A | N/A | 75.0 | Â | Â |
39 | D2MIT208 | AC | 2 | N/A | N/A | 75.0 | Â | Â |
40 | D5MIT98 | AC | 5 | N/A | N/A | 25.0 | Â | Â |
41 | D18MIT194 | TG | 18 | N/A | N/A | 85.0 | 55.0 | 70.5 |
42 | D13MIT19 | GA | 13 | N/A | N/A | 80.0 | 45.0 | 87.5 |
43 | D17MIT122 | AC | 17 | N/A | N/A | 70.0 | 42.5 | 78.5 |
44 | D12MIT91 | AC | 12 | N/A | N/A | 65.0 | 40.0 | 76.9 |
45 | D5MIT10 | AC | 5 | N/A | N/A | 70.0 | Â | Â |
46 | D3MIT203 | TG | 3 | N/A | N/A | 90.0 | 70.0 | 44.4 |
47 | D4MIT209 | TG | 4 | N/A | N/A | 60.0 | 32.5 | 91.6 |
48 | D15MIT161 | TG | 15 | N/A | N/A | 85.0 | 47.5 | 88.2 |
49 | D1MIT64 | AC | 1 | N/A | N/A | 70.0 | 42.5 | 78.5 |
50 | D14MIT60 | AC | 14 | N/A | N/A | 70.0 | 57.5 | 35.7 |
51 | D12MIT59 | AC | 12 | N/A | N/A | 70.0 | 50.0 | 57.1 |
52 | D1MIT440 | TG | 1 | N/A | N/A | 45.0 | 32.5 | 55.5 |
53 | D9MIT336 | AC | 9 | N/A | N/A | 70.6 | 41.2 | 83.3 |
54 | D13MIT16 | TG | 13 | N/A | N/A | 65.0 | 25.0 | 69.2 |
55 | D2MIT1 | AC | 2 | N/A | N/A | 85.0 | 55.0 | 70.5 |
56 | D4MIT348 | AC | 4 | N/A | N/A | 80.0 | 45.0 | 87.5 |
57 | H610 | G | 14 | ctacagtagtagcatgagaggtggtg | caaaagaatttctccttttacattgg | 85.0 | Â | Â |
58 | Barvaz | GA | 1 | tggctgcacaaacaagataggag | cgaaacgtgctgtgtccattttg | 30.0 | 15.0 | 100 |
59 | L2924 | AAAGGG | 12 | ggtgggtctctgtgggtttgag | tcatctccattagcacctgagcac | 40.0 | Â | Â |
60 | L0382 | AG | 5 | catcgtggaaactgacccttcc | tgtgaaggcaccaaaattgagtttc | 80.0 | 57.5 | 56.2 |
61 | D2MIT66 | AC | 2 | gttgcacaggcaatcaacc | atctatcactggggctgtgc | 40.0 | Â | Â |
62 | D2MIT411 | AC | 2 | acactcacaactacgagataaagcc | aggtcattagggctgtcttcc | 52.9 | 26.5 | 100 |
63 | D1MIT1001 | AC | 1 | ttgtgtgtagtacagtgttggtgg | tggttcctgacatcaatctcc | 85.0 | Â | Â |
64 | D2MIT100 | AC | 2 | gtgttcctaaggttgtattttggc | gaaatttgacaattgctaggtgc | 80.0 | 50.0 | 75.0 |
65 | D1MIT426 | AC | 1 | ctgccatccactacttggtg | caaatgatacagtggaaacccc | 85.0 | 60.0 | 58.8 |
66 | L2621 | AC | 12 | atgaaaagatgcaaattccagcac | aggctgccatacactcctccag | 80.0 | 70.0 | 25.0 |
67 | L3464 | AAG | 16 | ttcagtctcctcccatctgtgc | cgatgtgttgtgcattggttcc | 70.0 | 40.0 | 85.7 |
68 | L2454 | AGTC | 17 | ttccccacatcgctgtaaatgg | tggcctgagacaaaagcctagc | 84.6 | 61.5 | 54.5 |
69 | M4 | AAG | 6 | acggcgtgccttttcattttac | cttgtcccttgctgctcatctg | 65.0 | 42.5 | 69.2 |
70 | L2462 | AAAGC | 3 | ccagagatacatagtgagaccatgacg | ctgatggtcctgctggcttttag | 65.0 | 55.0 | 30.7 |
71 | L6231 | AGC | 5 | actccccacagaggtcaccaag | gctggctctcctgtagacattgg | 65.0 | 47.5 | 53.8 |
72 | L1053 | AAAG | 7 | aggcctatctttgccgcagac | gcctggcattgtatctcaggttc | 35.0 | 27.5 | 42.8 |
73 | L2492 | AAAGG | 5 | acccacatagaggcagggtgag | tcacagactgagttgaaggagaagg | 40.0 | 25.0 | 75.0 |
74 | M16 | AAGC | 10 | ttcaggtagatacatcagacctgtgg | aagtcttgggggaacagtcgag | 75.0 | 45.0 | 80.0 |
75 | M19 | TCTCT | 10 | tgtgcagggaagactggatctg | tgatcatctcaagtgttttgtcacg | 75.0 | 45.0 | 80.0 |
76 | H341 | G | 12 | gcctaggacataaggatggtagattg | taggttgatatgtgagtgcaaagaaag | 25.0 | Â | Â |
77 | L1463 | CCTCTTCTT | 16 | catcaccccagctctttgaatc | tcccagaaatatgttgaacttcagtc | 40.0 | 22.5 | 87.5 |
78 | M2 | AC | 5 | aggccacacctgagcttttagc | tcttcccaatcaccgattcacc | 70.0 | Â | Â |
79 | M7 | AAG | 6 | tccagccttcagtaggcacagg | ggacaactaccacaaaattccaagg | 60.0 | 37.5 | 75.0 |
80 | M11 | TTTC | 11 | aaactttatcaggaggaaagtgaaagc | ggccacatcacttttgaagctg | 35.0 | 20.0 | 85.7 |
81 | M6 | AGA | 1 | ggacaaaccaatgtgttcttgtgtg | tgagcagcatctctggagaacag | 80.0 | 40.0 | 100 |
82 | M8 | TCC | X | aagttgcccagaggggaatgtc | ttcatggaaataaacatgcttctgg | 40.0 | 40.0 | Â |
83 | M18 | AAGCA | 3 | agaccaggcaccaccagtcaag | cgtaaagaacgcagataaagcttgc | 65.0 | Â | Â |
84 | M15 | CTAT | 18 | acttggaggaggacggtgagag | tttacttagtgctcagcttggaagg | 65.0 | 45.0 | 61.5 |
85 | L2941 | AG | 1 | gtaggcctgcaaagcaggagtg | ggtctgggctagggtgggaag | 75.0 | 47.5 | 73.3 |
86 | D1MIT495 | TC...AC | 1 | ccaccttgctccaaaagaaa | tctgagaggctgccacaata | 75.0 | 47.5 | 73.3 |
87 | L7262 | AAC | 2 | ctgagttggcaggcaaaatgtg | ttgcctctcaagcctttgtgtc | 71.4 | 46.4 | 70.0 |
88 | L4163 | GCCTCCT | 2 | tggctggactgagattccacag | caaaccctttagcagagcatgg | 70.0 | 47.5 | 64.3 |
89 | M13 | CTTT | 14 | gggcataaattgtttgtcgcttg | gtgtgactgctcgcttcccatc | 60.0 | 35.0 | 83.3 |
90 | M17 | AGAA | X | tctcatggatgaacctataaacaaagg | aattgaaaagtgtgagcccatgc | 35.0 | 35.0 | Â |
Loci amplified by singleplex PCRs (91–124) | ||||||||
91 | IDT5 | TC | 13 | gagccaactctatgggctgagg | catagcaaccccatccttcctg | 80.0 | 60.0 | 50.0 |
92 | IDT7 | AG | 13 | gcccctgaatcttgaactggtg | ccccaaaagtagccaacagtgg | 80.0 | 55.0 | 62.5 |
93 | IDT8 | GA | 6 | catacagtgccccctccctaag | agctttcctgaggggcattctc | 90.0 | 70.0 | 44.4 |
94 | IDT12 | AG | 4 | gaatagcatcaccgcactgcac | agaggtccgttgcatctgttgg | 80.0 | 42.5 | 93.7 |
95 | IDT13 | AC | 2 | ggagggttttaaatagggaatgtgaag | tgcaaagtgcccttctttgacc | 90.0 | 60.0 | 66.6 |
96 | IDT14 | TC | 14 | cgaactctttgcctcctgtatttcc | cagaatctggacaccacaacattacac | 95.0 | 62.5 | 68.4 |
97 | LX1 | A | X | ccgaggatctttcctcgtttattg | ttcatgctgtcccagaccagtg | 80.0 | 80.0 | Â |
98 | LX6 | G | X | tggcagccatagttcattcagg | agtaggggaaatggcagggttg | 80.0 | 80.0 | Â |
99 | LX7 | C | X | catgtgaaagtggtgtcaacttgg | cagtatttggtggcctttcatcg | 50.0 | 50.0 | Â |
100 | LX10 | GA | X | cccgacttcctgcttcttttcc | cattccttcatcccctccttcc | 80.0 | 80.0 | Â |
101 | LX11 | A | X | cctttctgcttggggttctgtg | ggaaaaggaagtgcagggagag | 75.0 | 75.0 | Â |
102 | LX33 | GA | X | tgaactctggtcaatcatctcacag | ccccaaagcatttacacatataggg | 75.0 | 75.0 | Â |
103 | LX39 | GT | X | ttgtcccaagagttccacaagg | accagtatggccaaaggagcag | 80.0 | 80.0 | Â |
104 | LX46 | A | X | ggaaggggaaacaaccaaaatg | cccacttgtagaacagtttgccttc | 70.0 | 70.0 | Â |
105 | LX12 | T | X | ttctagtccatccagcccttcc | ggggcgtgctgtaccttaattg | 75.0 | 75.0 | Â |
106 | LX35 | TC | X | atgagcaggaggaggagtgctg | aagagcgagaaatgacgcaagg | 80.0 | 80.0 | Â |
107 | LX40 | AC | X | aggaccccatctcttggtttgg | gccagccttgaggaatacaacg | 40.0 | 40.0 | Â |
108 | LX27 | A | X | caactcagttcccccatgacac | tccaaaaaccaggcaattctcc | 80.0 | 80.0 | Â |
109 | LX42 | GT | X | tcatagaccccaaactggctgtc | tggagcagcctagtggaattgtc | 80.0 | 80.0 | Â |
110 | LX43 | CA | X | tcttttgtggatgccagagtcaag | tggatatgggcattgaatcttcg | 75.0 | 75.0 | Â |
111 | LX18 | T | X | gaagagcctcagctgcaaggac | cgccaatcaaccccatttttag | 75.0 | 75.0 | Â |
112 | LX47 | GT | X | gagccaacaaggtccctgaaac | ggggagcatttgctgaattacc | 75.0 | 75.0 | Â |
113 | LX17 | G | X | caccatcagcctttcccaagac | cctctctggctttgctttctgg | 65.0 | 65.0 | Â |
114 | LX20 | T | X | ggcatcctcgctattccatgag | caaatgctgtggaattcaccaatg | 80.0 | 80.0 | Â |
115 | LX25 | GA | X | tattgcctgtggaagggattgg | ggcaatgccatttggctcttag | 35.0 | 35.0 | Â |
116 | LX28 | TC | X | tggattccgatattcaacaatacatcc | ctgagcactctgcgagcaaaac | 50.0 | 50.0 | Â |
117 | LX34 | CT | X | cagcaaaaacaggtggctgtg | aatgcagggctcaggaaatgag | 35.0 | 35.0 | Â |
118 | LX32 | AG | X | atgttcaatgcatcccctctcc | tgatggggactcagagttttcg | 45.0 | 45.0 | Â |
119 | LX31 | GA | X | tgatgccatccaaaatcatcatc | gccaggtaggaagatggtcagtc | 45.0 | 45.0 | Â |
120 | LX24 | A | X | cggggacattccacgttagttc | gcttatggtggattccctgtgc | 40.0 | 40.0 | Â |
121 | SRY | Â | Y | gtgagaggcacaagttggc | ctctgtgtaggatcttcaatc | 85.0 | 85.0 | Â |
122 | P53short | Â | 11 | Ttcttactgccttgtgctggtc | aagaggtgactttggggtgaag | 85.0 | Â | Â |
123 | P53long | Â | 11 | Acacctgatcgttactcggcttgtc | ttcactacaaaggctgagctgg | 64.7 | Â | Â |
124 | ND3 | Â | Mt | acgtctccatttattgatgagg | gaggttgaagaaggtagatggc | 100.0 | Â | Â |