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Table 1 Loci information and amplification statistics

From: Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues

 

Name

Repeat

Chr

Forward primer

Reverse primer

Amp/L (%)

Amp/A (%)

ADO (%)

Loci amplified by multiplex PCRs (1–90)

1

D16MIT189

AC

16

N/A

N/A

70.0

45.0

71.4

2

D9MIT201

TG

9

N/A

N/A

75.0

57.5

46.7

3

D12MIT182

TG

12

N/A

N/A

75.0

42.5

86.7

4

D4MIT203

TG

4

N/A

N/A

65.0

35.0

92.3

5

D17MIT180

TG

17

N/A

N/A

80.0

45.0

87.5

6

D1MIT316

AC

1

N/A

N/A

50.0

30.0

80.0

7

D1MIT206

TG

1

N/A

N/A

65.0

45.0

61.5

8

D9MIT250

AC

9

N/A

N/A

80.0

52.5

68.7

9

D4MIT17

TG

4

N/A

N/A

80.0

57.5

56.2

10

D5MIT425

AC

5

N/A

N/A

55.0

30.0

90.9

11

D18MIT222

TC

18

N/A

N/A

85.0

85.0

0

12

D4MIT18

TG

4

N/A

N/A

70.0

45.0

71.4

13

D7MIT259

AC

7

N/A

N/A

75.0

42.5

86.6

14

D10MIT213

TG

10

N/A

N/A

75.0

37.5

100

15

D9MIT198

TG

9

N/A

N/A

70.0

47.5

64.3

16

D10MIT95

AC

10

N/A

N/A

65.0

35.0

92.3

17

D14MIT170

TG

14

N/A

N/A

60.0

  

18

D19MIT88

GA

19

N/A

N/A

85.0

50.0

82.3

19

D15MIT44

AC

15

N/A

N/A

25.0

15.0

80.0

20

D5MIT146

TG

5

N/A

N/A

80.0

52.5

68.7

21

D8MIT45

AC

8

N/A

N/A

85.0

50.0

82.3

22

D15MIT159

AC

15

N/A

N/A

70.0

45.0

71.4

23

D19MIT33

TC

19

N/A

N/A

80.0

62.5

43.7

24

D6MIT36

TG

6

N/A

N/A

55.0

40.0

54.5

25

D10MIT233

AC

10

N/A

N/A

80.0

47.5

81.2

26

D1MIT132

GA

1

N/A

N/A

55.0

32.5

81.8

27

D19MIT26

TG

19

N/A

N/A

60.0

35.0

83.3

28

D6MIT284

AC

6

N/A

N/A

65.0

42.5

69.2

29

D8MIT292

AC

8

N/A

N/A

70.0

42.5

78.5

30

D8MIT120

AC

8

N/A

N/A

70.0

45.0

71.4

31

D2MIT285

TG

2

N/A

N/A

55.0

40.0

54.5

32

D11MIT285

AC

11

N/A

N/A

70.0

50.0

57.1

33

D11MIT143

AC

11

N/A

N/A

80.0

50.0

75.0

34

D1MIT102

TG

1

N/A

N/A

75.0

50.0

66.6

35

D11MIT86

TG

11

N/A

N/A

80.0

42.5

93.7

36

D2MIT242

TG

2

N/A

N/A

65.0

35.0

92.3

37

D14MIT126

AC

14

N/A

N/A

90.0

57.5

72.2

38

D14MIT174

TG

14

N/A

N/A

75.0

  

39

D2MIT208

AC

2

N/A

N/A

75.0

  

40

D5MIT98

AC

5

N/A

N/A

25.0

  

41

D18MIT194

TG

18

N/A

N/A

85.0

55.0

70.5

42

D13MIT19

GA

13

N/A

N/A

80.0

45.0

87.5

43

D17MIT122

AC

17

N/A

N/A

70.0

42.5

78.5

44

D12MIT91

AC

12

N/A

N/A

65.0

40.0

76.9

45

D5MIT10

AC

5

N/A

N/A

70.0

  

46

D3MIT203

TG

3

N/A

N/A

90.0

70.0

44.4

47

D4MIT209

TG

4

N/A

N/A

60.0

32.5

91.6

48

D15MIT161

TG

15

N/A

N/A

85.0

47.5

88.2

49

D1MIT64

AC

1

N/A

N/A

70.0

42.5

78.5

50

D14MIT60

AC

14

N/A

N/A

70.0

57.5

35.7

51

D12MIT59

AC

12

N/A

N/A

70.0

50.0

57.1

52

D1MIT440

TG

1

N/A

N/A

45.0

32.5

55.5

53

D9MIT336

AC

9

N/A

N/A

70.6

41.2

83.3

54

D13MIT16

TG

13

N/A

N/A

65.0

25.0

69.2

55

D2MIT1

AC

2

N/A

N/A

85.0

55.0

70.5

56

D4MIT348

AC

4

N/A

N/A

80.0

45.0

87.5

57

H610

G

14

ctacagtagtagcatgagaggtggtg

caaaagaatttctccttttacattgg

85.0

  

58

Barvaz

GA

1

tggctgcacaaacaagataggag

cgaaacgtgctgtgtccattttg

30.0

15.0

100

59

L2924

AAAGGG

12

ggtgggtctctgtgggtttgag

tcatctccattagcacctgagcac

40.0

  

60

L0382

AG

5

catcgtggaaactgacccttcc

tgtgaaggcaccaaaattgagtttc

80.0

57.5

56.2

61

D2MIT66

AC

2

gttgcacaggcaatcaacc

atctatcactggggctgtgc

40.0

  

62

D2MIT411

AC

2

acactcacaactacgagataaagcc

aggtcattagggctgtcttcc

52.9

26.5

100

63

D1MIT1001

AC

1

ttgtgtgtagtacagtgttggtgg

tggttcctgacatcaatctcc

85.0

  

64

D2MIT100

AC

2

gtgttcctaaggttgtattttggc

gaaatttgacaattgctaggtgc

80.0

50.0

75.0

65

D1MIT426

AC

1

ctgccatccactacttggtg

caaatgatacagtggaaacccc

85.0

60.0

58.8

66

L2621

AC

12

atgaaaagatgcaaattccagcac

aggctgccatacactcctccag

80.0

70.0

25.0

67

L3464

AAG

16

ttcagtctcctcccatctgtgc

cgatgtgttgtgcattggttcc

70.0

40.0

85.7

68

L2454

AGTC

17

ttccccacatcgctgtaaatgg

tggcctgagacaaaagcctagc

84.6

61.5

54.5

69

M4

AAG

6

acggcgtgccttttcattttac

cttgtcccttgctgctcatctg

65.0

42.5

69.2

70

L2462

AAAGC

3

ccagagatacatagtgagaccatgacg

ctgatggtcctgctggcttttag

65.0

55.0

30.7

71

L6231

AGC

5

actccccacagaggtcaccaag

gctggctctcctgtagacattgg

65.0

47.5

53.8

72

L1053

AAAG

7

aggcctatctttgccgcagac

gcctggcattgtatctcaggttc

35.0

27.5

42.8

73

L2492

AAAGG

5

acccacatagaggcagggtgag

tcacagactgagttgaaggagaagg

40.0

25.0

75.0

74

M16

AAGC

10

ttcaggtagatacatcagacctgtgg

aagtcttgggggaacagtcgag

75.0

45.0

80.0

75

M19

TCTCT

10

tgtgcagggaagactggatctg

tgatcatctcaagtgttttgtcacg

75.0

45.0

80.0

76

H341

G

12

gcctaggacataaggatggtagattg

taggttgatatgtgagtgcaaagaaag

25.0

  

77

L1463

CCTCTTCTT

16

catcaccccagctctttgaatc

tcccagaaatatgttgaacttcagtc

40.0

22.5

87.5

78

M2

AC

5

aggccacacctgagcttttagc

tcttcccaatcaccgattcacc

70.0

  

79

M7

AAG

6

tccagccttcagtaggcacagg

ggacaactaccacaaaattccaagg

60.0

37.5

75.0

80

M11

TTTC

11

aaactttatcaggaggaaagtgaaagc

ggccacatcacttttgaagctg

35.0

20.0

85.7

81

M6

AGA

1

ggacaaaccaatgtgttcttgtgtg

tgagcagcatctctggagaacag

80.0

40.0

100

82

M8

TCC

X

aagttgcccagaggggaatgtc

ttcatggaaataaacatgcttctgg

40.0

40.0

 

83

M18

AAGCA

3

agaccaggcaccaccagtcaag

cgtaaagaacgcagataaagcttgc

65.0

  

84

M15

CTAT

18

acttggaggaggacggtgagag

tttacttagtgctcagcttggaagg

65.0

45.0

61.5

85

L2941

AG

1

gtaggcctgcaaagcaggagtg

ggtctgggctagggtgggaag

75.0

47.5

73.3

86

D1MIT495

TC...AC

1

ccaccttgctccaaaagaaa

tctgagaggctgccacaata

75.0

47.5

73.3

87

L7262

AAC

2

ctgagttggcaggcaaaatgtg

ttgcctctcaagcctttgtgtc

71.4

46.4

70.0

88

L4163

GCCTCCT

2

tggctggactgagattccacag

caaaccctttagcagagcatgg

70.0

47.5

64.3

89

M13

CTTT

14

gggcataaattgtttgtcgcttg

gtgtgactgctcgcttcccatc

60.0

35.0

83.3

90

M17

AGAA

X

tctcatggatgaacctataaacaaagg

aattgaaaagtgtgagcccatgc

35.0

35.0

 

Loci amplified by singleplex PCRs (91–124)

91

IDT5

TC

13

gagccaactctatgggctgagg

catagcaaccccatccttcctg

80.0

60.0

50.0

92

IDT7

AG

13

gcccctgaatcttgaactggtg

ccccaaaagtagccaacagtgg

80.0

55.0

62.5

93

IDT8

GA

6

catacagtgccccctccctaag

agctttcctgaggggcattctc

90.0

70.0

44.4

94

IDT12

AG

4

gaatagcatcaccgcactgcac

agaggtccgttgcatctgttgg

80.0

42.5

93.7

95

IDT13

AC

2

ggagggttttaaatagggaatgtgaag

tgcaaagtgcccttctttgacc

90.0

60.0

66.6

96

IDT14

TC

14

cgaactctttgcctcctgtatttcc

cagaatctggacaccacaacattacac

95.0

62.5

68.4

97

LX1

A

X

ccgaggatctttcctcgtttattg

ttcatgctgtcccagaccagtg

80.0

80.0

 

98

LX6

G

X

tggcagccatagttcattcagg

agtaggggaaatggcagggttg

80.0

80.0

 

99

LX7

C

X

catgtgaaagtggtgtcaacttgg

cagtatttggtggcctttcatcg

50.0

50.0

 

100

LX10

GA

X

cccgacttcctgcttcttttcc

cattccttcatcccctccttcc

80.0

80.0

 

101

LX11

A

X

cctttctgcttggggttctgtg

ggaaaaggaagtgcagggagag

75.0

75.0

 

102

LX33

GA

X

tgaactctggtcaatcatctcacag

ccccaaagcatttacacatataggg

75.0

75.0

 

103

LX39

GT

X

ttgtcccaagagttccacaagg

accagtatggccaaaggagcag

80.0

80.0

 

104

LX46

A

X

ggaaggggaaacaaccaaaatg

cccacttgtagaacagtttgccttc

70.0

70.0

 

105

LX12

T

X

ttctagtccatccagcccttcc

ggggcgtgctgtaccttaattg

75.0

75.0

 

106

LX35

TC

X

atgagcaggaggaggagtgctg

aagagcgagaaatgacgcaagg

80.0

80.0

 

107

LX40

AC

X

aggaccccatctcttggtttgg

gccagccttgaggaatacaacg

40.0

40.0

 

108

LX27

A

X

caactcagttcccccatgacac

tccaaaaaccaggcaattctcc

80.0

80.0

 

109

LX42

GT

X

tcatagaccccaaactggctgtc

tggagcagcctagtggaattgtc

80.0

80.0

 

110

LX43

CA

X

tcttttgtggatgccagagtcaag

tggatatgggcattgaatcttcg

75.0

75.0

 

111

LX18

T

X

gaagagcctcagctgcaaggac

cgccaatcaaccccatttttag

75.0

75.0

 

112

LX47

GT

X

gagccaacaaggtccctgaaac

ggggagcatttgctgaattacc

75.0

75.0

 

113

LX17

G

X

caccatcagcctttcccaagac

cctctctggctttgctttctgg

65.0

65.0

 

114

LX20

T

X

ggcatcctcgctattccatgag

caaatgctgtggaattcaccaatg

80.0

80.0

 

115

LX25

GA

X

tattgcctgtggaagggattgg

ggcaatgccatttggctcttag

35.0

35.0

 

116

LX28

TC

X

tggattccgatattcaacaatacatcc

ctgagcactctgcgagcaaaac

50.0

50.0

 

117

LX34

CT

X

cagcaaaaacaggtggctgtg

aatgcagggctcaggaaatgag

35.0

35.0

 

118

LX32

AG

X

atgttcaatgcatcccctctcc

tgatggggactcagagttttcg

45.0

45.0

 

119

LX31

GA

X

tgatgccatccaaaatcatcatc

gccaggtaggaagatggtcagtc

45.0

45.0

 

120

LX24

A

X

cggggacattccacgttagttc

gcttatggtggattccctgtgc

40.0

40.0

 

121

SRY

 

Y

gtgagaggcacaagttggc

ctctgtgtaggatcttcaatc

85.0

85.0

 

122

P53short

 

11

Ttcttactgccttgtgctggtc

aagaggtgactttggggtgaag

85.0

  

123

P53long

 

11

Acacctgatcgttactcggcttgtc

ttcactacaaaggctgagctgg

64.7

  

124

ND3

 

Mt

acgtctccatttattgatgagg

gaggttgaagaaggtagatggc

100.0

  
  1. Amp/L – amplification per locus
  2. Amp/A – amplification per allele. Calculated for heterozygous and hemizygous loci.
  3. ADO – allele drop out. Calculated for heterozygous loci
  4. N/A – Not available