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Table 2 Representative examples of complimentary bases between the displaced 3'-end (upper sequence) and the new template (lower sequence).

From: Mechanism of chimera formation during the Multiple Displacement Amplification reaction

ReadID

 

075540_3218_3423

5'-CCGAAAATTACTCTACC-3'                       

 

              3'-TGGCTGTTACTGAGCGCTTAGGTCGT-5'

116645_2999_1485

5'-ATAAATTAAATGAATG-3'                         

 

              3'TACTCGAAAGGAGTGCTGACCCAGCCCG-5'

011550_4060_0841

5'-ACCACAACAGAACCTTCTTT-3'                     

 

                 3'GAAACTTTTACTGTTGTAGTAAGTG-5'

045228_3788_1694

5'-CCTCGTCGG-CGGTTTTCATC-3'                   

 

                 3'-GTAGAC-CTTACACGTTTTACCG-5'

045274_2234_1769

5'-TACGGTTGTATGCTGCGC-3'                      

 

             3'-ACGCGAACAGATATCCACCTCAAATGC-5'

127787_3000_2253

5'-CCAGCAGGGATTGCGTCATCGC-3'                   

 

                  3'-AGCGTATTGGGCATGGTTTCAGT-5'

106844_3069_3603

5'-ATGTAGCCAGCAACATTAT-3'                      

 

             3'-GTAATATTCGTTCTCGGTATGGGTTCTC-5'

002131_3149_2822

5'-GGCGACTATGCACTAGGGAA-3'                     

 

               3'-CCCTTACGGACACGTTTAATCAAGAC-5'

175043_3546_0829

5'-ATCTGATAGTCCAGAAAACC-3'                     

 

               3'-TTTGGTCGTAGTTGTTTCTCTAACCA-5'

114939_3307_2524

5'-CTTCGACGATACCCATGCCGGA-3'                   

 

                 3'-GGCCTTCTTCACGCATTTTGCTTGA-5

148627_3831_3379

5'-CCCATTGCCGTCGTACTTTTGATTGTT-3'              

 

                      3'-AACAATGAAGCCCGTTTCC-5'

004326_2840_3105

5'-CGCTGCGTGATTCCCACGCCGG-3'                

 

                   3'-GCGGCCATGCCTTTGG-CTTAACAG-5'

096255_3814_0862

5'-CCAGTGAATTTCACTTCGCCAACG-3'                 

 

                  3'-GGTTGCCCGACCGGGTGTTCAAC-5'

034769_3258_1412

5'-TGTACTAAAAGGGTAGTCAGAAAAA-3'                

 

                  3'-TCTTTTTGGTCCAGAGCTAAAAT-5'

151610_2448_0137

5'-GAGGCAACATTTGATCGTCAGTG-3'                 

 

                3'-CAGTCATACTTTTCAGGCACCGTCG-5'

066589_3139_3159

5'-CGCCAGGAAACATTGCACACCACGC-3'                

 

                 3'-GTGGGGCGCTAGCGCTCCGTTTGG-5'

173672_2559_2768

5'-CATTCCCGGAATTACATATCTTT-3'                  

 

               3'-TATAGAAAAAGTAATCCGTCACCGGA-5'

116413_2206_3333

5'-GCATATCTCCATCCTGAGTGACGC-3'                 

 

               3'-CTCATTGCGAAAACCAACCCGCTCTT-5'

117929_3656_1113

5'-TTTGAAATATCCACTATTAAGCTAGTGTTTAACG-3'                 

 

                        3'-CACAAATTGCGTCGGAA-5'

058603_2536_1539

5'-CCGCATGCATGACCGTTTTTGTGAA-3'                

 

              3'-CAAAAACACTTAGAGTGGTTAGGGTTT-5'

127287_2649_1441

5'-GCGCACGTAGTTCGCAGGACGC-GGGT-3'              

 

             3'-CGTCCTGCGGCCCAAGACGACTAGCTAT-5'

  1. All examples are from the set of inverted chimeras for segments <10 kb apart. Base pairs between the 3'-end and the new template are shown in bold. (see Methods for Assignment of Chimeric Junctions).