Table 5 List of genes found in Eriobotrya japonica cpDNA
From: Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium
Gene category | Gene group | Gene name |
|---|---|---|
Photosynthesis related genes | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
Cytochrome b/f complex | petA(× 2), petB*, petD*, petG, petL, petN | |
ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
NADH dehydrogenase | ndhA, ndhB*(× 2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
RubisCO large subunit | rbcl | |
Transcription and translation related genes | Ribosomal proteins(SSU) | rps2, rps3, rps4, rps7(× 2), rps8, rps11, rps12**(× 2), rps14, rps15, rps16*, rps18, rps19 |
Ribosomal proteins(LSU) | rpl2*(× 2), rpl14, rpl16*, rpl20, rpl22, rpl23(× 2), rpl32, rpl33, rpl36 | |
RNA genes | Ribosomal RNAs | rrn4.5(× 2), rrn5(× 2), rrn16(× 2), rrn23(× 2) |
Transfer RNAs | trnS-GGA, trnS-UGA, trnS-GCU, trnE-UUC, trnT-UGU, trnT-GGU, trnF-GAA, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU(× 2), trnI-GAU*(× 2), trnL-CAA(× 2), trnL-UAA*, trnL-UAG, trnV-GAC(× 2), trnV-UAC*, trnR-ACG(× 2), trnR-UCU, trnN-GUU(× 2), trnH-GUG, trnQ-UUG, trnC-GCA, trnD-GUC, trnY-GUA, trnG-UCC*, trnfM-CAU, trnK-UUU*, trnA-UGC*(× 2), trnG-GCC | |
RNA polymerase | ropA, ropB, ropC1*, ropC2 | |
Other genes | Â | ccsA, accD, cemA, clpP**, matK |
Proteins of unknown function | ycf | ycf1, ycf2(× 2), ycf3**, ycf4 |