Table 3 Comparison of simple repeats (SSR) in 11 cp genomes
From: Chloroplast genome sequencing based on genome skimming for identification of Eriobotryae Folium
Sample | Mononucleotides | Dinucleotides | Trinucleotides | Tetranucleotides | Pentanucleotides | Hexanucleotides | Total |
|---|---|---|---|---|---|---|---|
E. japonica-1 | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
E. japonica-2 | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
PPY-1 | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
PPY-2 | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
PPY-3 | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
SP | 70 | 15 | 0 | 6 | 1 | 0 | 92 |
E. cavaleriei | 70 | 15 | 0 | 4 | 1 | 0 | 90 |
E. deflexa | 83 | 17 | 0 | 6 | 1 | 1 | 108 |
E. fragrans | 75 | 17 | 0 | 6 | 0 | 0 | 98 |
D. turbinata | 58 | 18 | 6 | 9 | 1 | 1 | 93 |
M. grandiflora | 30 | 9 | 3 | 9 | 0 | 2 | 53 |
Total | 736 | 166 | 9 | 70 | 9 | 4 | 994 |
Ratio | 74.04% | 16.70% | 0.91% | 7.04% | 0.91% | 0.40% | 100% |