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Table 1 Top 10% genes with significant differential expression identified in E_BITC and C_BITC from RNA sequencing

From: Bacteriostatic effects of benzyl isothiocyanate on Vibrio parahaemolyticus: Transcriptomic analysis and morphological verification

Gene ID

Gene

Protein function

Log2 fold change

p-value (10–3)

Significant

Enzyme-related genes

VP2403

ebgA

Cryptic beta-D-galactosidase subunit alpha

− 0.96863

0.23446

DOWN

VP2296

 

Membrane-bound lytic murein transglycosylase D

− 0.95036

0.00809

DOWN

VP0178

pyrE

Orotate phosphoribosyltransferase

− 0.92727

0.17420

DOWN

VP0351

 

Long-chain-fatty-acid-CoA ligase

− 0.89877

0.00450

DOWN

VP1165

 

Manganese-dependent inorganic pyrophosphatase

− 0.89342

0.15740

DOWN

VP2545

 

Oxaloacetate decarboxylase subunit gamma

− 0.84906

0.28461

DOWN

VP0470

 

Carbamoyl phosphate synthase small subunit

− 0.83836

0.55676

DOWN

VPA1169

folE

GTP cyclohydrolase I

− 0.83411

0.37947

DOWN

VP0177

rph

Ribonuclease PH

− 0.81994

0.22615

DOWN

VP2522

 

Quinolinate phosphoribosyltransferase

− 0.78394

0.64769

DOWN

VP0926

 

5'-deoxynucleotidase

0.77483

0.89284

UP

VP2120

 

Short chain dehydrogenase

− 0.75714

0.01611

DOWN

VP2386

glpK

Glycerol kinase

0.74715

1.25960

UP

VP2031

cmk

Cytidylate kinase

− 0.73197

0.69765

DOWN

Protein-related genes

VP2869

 

Sodium/solute symporter

1.2476

0.00022

UP

VP0540

 

Carbon starvation protein A

1.1688

0.31199E-7

UP

VP1286

 

Integral membrane protein

1.0379

0.00400

UP

VPA0496

 

Heavy metal membrane efflux protein

0.92515

0.04963

UP

VP0903

 

RhlE protein

− 0.88603

1.03030

DOWN

VPA0963

uhpT

Sugar phosphate antiporter

− 0.88364

0.12876

DOWN

VP1091

 

Transmembrane protein affecting septum formation and cell membrane permeability

− 0.83853

0.12352

DOWN

VP1267

 

Lipoprotein

− 0.82293

1.08150

DOWN

VP0821

 

Heat shock protein 90

0.81662

0.08014

UP

VPA1458

 

Phosphate ABC transporter ATP-binding protein

0.81113

2.83860

UP

VP3027

 

Thiamine biosynthesis protein ThiC

− 0.77935

0.24646

DOWN

VPA1704

 

Integral membrane protein transporter

0.76615

2.18070

UP

VP1278

 

SpoOM-like protein

− 0.75022

1.68430

DOWN

VP0407

rpsU

30S ribosomal protein S21

− 0.75017

0.47875

DOWN

VP1256

 

NadC family protein

− 0.74166

0.02730

DOWN

VP0180

slmA

Nucleoid occlusion protein

− 0.73893

2.70710

DOWN

Bacterial chemotaxis

VP2248

fliG

Flagellar motor switch protein G

− 0.79604

0.14531

DOWN

VP1892

 

Methyl-accepting chemotaxis protein

− 0.82761

0.02157

DOWN

Hypothetical protein

VP1677

 

Hypothetical protein

1.9793

0.20439E-10

UP

VP2868

 

Hypothetical protein

1.4143

0.00015

UP

VP1679

 

Hypothetical protein

1.1181

0.02512

UP

VP1238

 

Hypothetical protein

− 0.88005

0.58264E-4

DOWN

VPA0208

 

Hypothetical protein

− 0.87862

0.11346

DOWN

VP0962

 

Hypothetical protein

0.84754

0.07430

UP

VPA1370

 

Hypothetical protein

− 0.83752

0.06318

DOWN

VPA0969

 

Hypothetical protein

0.80972

0.00466

UP

VPA0521

 

Hypothetical protein

− 0.79721

1.20070

DOWN

VP1380

 

Hypothetical protein

0.78381

0.05645

UP

VPA0114

 

Hypothetical protein

0.77526

1.45350

UP

VP1288

 

Hypothetical protein

0.7717

0.94068

UP

VP1980

 

Hypothetical protein

− 0.77034

0.34407

DOWN

VPA1613

 

Hypothetical protein

− 0.7494

1.35230

DOWN

VP1287

 

Hypothetical protein

0.7427

1.93820

UP

Other genes

VP2826

 

Transporter

− 0.81597

0.21954

DOWN

VPA1006

 

LysR family transcriptional regulator

− 0.75038

0.97802

DOWN

VP0653

dnaK

Molecular chaperone DnaK

0.80187

0.02678

UP

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BMC Biotechnology

ISSN: 1472-6750

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