TY - BOOK PY - 2018 DA - 2018// TI - World Markets and Trade PB - 20250: United States Department of Agriculture CY - Washington, DC ID - ref1 ER - TY - JOUR AU - Birru, E. AU - Erlich, C. AU - Martin, A. PY - 2019 DA - 2019// TI - Energy performance comparisons and enhancements in the sugar cane industry JO - Biomass Conversion Biorefinery VL - 9 UR - https://doi.org/10.1007/s13399-018-0349-z DO - 10.1007/s13399-018-0349-z ID - Birru2019 ER - TY - JOUR AU - Zhang, Z. Y. AU - Rackemann, D. W. AU - Doherty, W. O. S. AU - O’Hara, I. M. PY - 2013 DA - 2013// TI - Glycerol carbonate as green solvent for pretreatment of sugarcane bagasse JO - Biotechnol Biofuels. VL - 6 UR - https://doi.org/10.1186/1754-6834-6-153 DO - 10.1186/1754-6834-6-153 ID - Zhang2013 ER - TY - JOUR AU - Sharma, R. K. AU - Yadav, K. R. AU - Maheshwari, V. L. AU - Kothari, R. M. PY - 2000 DA - 2000// TI - Baggasse preservation: a need for a biotechnological approach JO - Crit Rev Biotechnol VL - 20 UR - https://doi.org/10.1080/07388550091144195 DO - 10.1080/07388550091144195 ID - Sharma2000 ER - TY - JOUR AU - Chinga-Carrasco, G. AU - Ehman, N. V. AU - Pettersson, J. AU - Vallejos, M. E. AU - Brodin, M. W. AU - Felissia, F. E. PY - 2018 DA - 2018// TI - Pulping and pretreatment affect the characteristics of bagasse inks for three-dimensional printing JO - ACS Sustain Chem Eng VL - 6 UR - https://doi.org/10.1021/acssuschemeng.7b04440 DO - 10.1021/acssuschemeng.7b04440 ID - Chinga-Carrasco2018 ER - TY - JOUR AU - Bian, J. AU - Peng, F. AU - Peng, X. -. P. AU - Peng, P. AU - Xu, F. AU - Sun, R. -. C. PY - 2013 DA - 2013// TI - Structural features and antioxidant activity of xylooligosaccharides enzymatically produced from sugarcane bagasse JO - Bioresour Technol VL - 127 UR - https://doi.org/10.1016/j.biortech.2012.09.112 DO - 10.1016/j.biortech.2012.09.112 ID - Bian2013 ER - TY - JOUR AU - Silva, C. F. AU - Azevedo, R. S. AU - Braga, C. AU - Silva, R. AU - Dias, E. S. AU - Schwan, R. F. PY - 2009 DA - 2009// TI - Microbial diversity in a bagasse-based compost prepared for the production of Agaricus brasiliensis JO - Braz J Microbiol VL - 40 UR - https://doi.org/10.1590/S1517-83822009000300023 DO - 10.1590/S1517-83822009000300023 ID - Silva2009 ER - TY - JOUR AU - Thomas, L. AU - Larroche, C. AU - Pandey, A. PY - 2013 DA - 2013// TI - Current developments in solid-state fermentation JO - Biochem Eng J VL - 81 UR - https://doi.org/10.1016/j.bej.2013.10.013 DO - 10.1016/j.bej.2013.10.013 ID - Thomas2013 ER - TY - JOUR AU - Pandey, A. AU - Soccol, C. R. AU - Nigam, P. AU - Soccol, V. T. PY - 2000 DA - 2000// TI - Biotechnological potential of agro-industrial residues. I: sugarcane bagasse JO - Bioresour Technol VL - 74 UR - https://doi.org/10.1016/S0960-8524(99)00142-X DO - 10.1016/S0960-8524(99)00142-X ID - Pandey2000 ER - TY - JOUR AU - Schutyser, W. AU - Renders, T. AU - Bosch, S. AU - Koelewijn, S. F. AU - Beckham, G. T. AU - Sels, B. F. PY - 2018 DA - 2018// TI - Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading JO - Chem Soc Rev VL - 47 UR - https://doi.org/10.1039/C7CS00566K DO - 10.1039/C7CS00566K ID - Schutyser2018 ER - TY - CHAP AU - Harrison, M. D. ED - O’Hara, I. M. ED - Sagadevan, M. PY - 2016 DA - 2016// TI - Sugarcane-derived animal feed BT - Sugarcane-based biofuels and bioproducts PB - Wiley CY - Hoboken ID - Harrison2016 ER - TY - JOUR AU - Lacey, J. PY - 1974 DA - 1974// TI - Molding of Sugar-Cane Bagasse and Its Prevention JO - Ann Appl Biol VL - 76 UR - https://doi.org/10.1111/j.1744-7348.1974.tb01357.x DO - 10.1111/j.1744-7348.1974.tb01357.x ID - Lacey1974 ER - TY - JOUR AU - Mhuantong, W. AU - Charoensawan, V. AU - Kanokratana, P. AU - Tangphatsornruang, S. AU - Champreda, V. PY - 2015 DA - 2015// TI - Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities JO - Biotechnol Biofuels. VL - 8 UR - https://doi.org/10.1186/s13068-015-0200-8 DO - 10.1186/s13068-015-0200-8 ID - Mhuantong2015 ER - TY - JOUR AU - Rattanachomsri, U. AU - Kanokratana, P. AU - Eurwilaichitr, L. AU - Igarashi, Y. AU - Champreda, V. PY - 2011 DA - 2011// TI - Culture-independent phylogenetic analysis of the microbial Community in Industrial Sugarcane Bagasse Feedstock Piles JO - Biosci Biotechnol Biochem VL - 75 UR - https://doi.org/10.1271/bbb.100429 DO - 10.1271/bbb.100429 ID - Rattanachomsri2011 ER - TY - JOUR AU - Schmidt, O. AU - Walter, K. PY - 1978 DA - 1978// TI - Succession and activity of microorganisms in stored bagasse JO - Eur J Appl Microbiol VL - 5 UR - https://doi.org/10.1007/BF00515688 DO - 10.1007/BF00515688 ID - Schmidt1978 ER - TY - JOUR AU - Wright, M. AU - Lima, I. AU - Bigner, R. PY - 2016 DA - 2016// TI - Microbial and physicochemical properties of sugarcane bagasse for potential conversion to value-added products JO - Int Sugar J VL - 118 ID - Wright2016 ER - TY - JOUR AU - BSLd, S. AU - AFS, G. AU - Franciscon, E. G. AU - JMd, O. AU - Baffi, M. A. PY - 2015 DA - 2015// TI - Thermotolerant and mesophylic fungi from sugarcane bagasse and their prospection for biomass-degrading enzyme production JO - Braz J Microbiol VL - 46 UR - https://doi.org/10.1590/S1517-838246320140393 DO - 10.1590/S1517-838246320140393 ID - BSLd2015 ER - TY - JOUR AU - Batista-García, R. A. AU - Balcázar-López, E. AU - Miranda-Miranda, E. AU - Sánchez-Reyes, A. AU - Cuervo-Soto, L. AU - Aceves-Zamudio, D. PY - 2014 DA - 2014// TI - Characterization of Lignocellulolytic activities from a moderate halophile strain of Aspergillus caesiellus isolated from a sugarcane bagasse fermentation JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0105893 DO - 10.1371/journal.pone.0105893 ID - Batista-García2014 ER - TY - JOUR AU - Garcia-Huante, Y. AU - Cayetano-Cruz, M. AU - Santiago-Hernandez, A. AU - Cano-Ramirez, C. AU - Marsch-Moreno, R. AU - Campos, J. E. PY - 2017 DA - 2017// TI - The thermophilic biomass-degrading fungus Thielavia terrestris Co3Bag1 produces a hyperthermophilic and thermostable beta-1,4-xylanase with exo- and endo-activity JO - Extremophiles. VL - 21 UR - https://doi.org/10.1007/s00792-016-0893-z DO - 10.1007/s00792-016-0893-z ID - Garcia-Huante2017 ER - TY - JOUR AU - Moretti, M. M. S. AU - Bocchini-Martins, D. A. AU - Silva, R. D. AU - Rodrigues, A. AU - Sette, L. D. AU - Gomes, E. PY - 2012 DA - 2012// TI - Selection of thermophilic and thermotolerant fungi for the production of cellulases and xylanases under solid-state fermentation JO - Braz J Microbiol. VL - 43 UR - https://doi.org/10.1590/S1517-83822012000300032 DO - 10.1590/S1517-83822012000300032 ID - Moretti2012 ER - TY - JOUR AU - Shrestha, P. AU - Szaro, T. M. AU - Bruns, T. D. AU - Taylor, J. W. PY - 2011 DA - 2011// TI - Systematic search for cultivatable Fungi that best deconstruct cell walls of Miscanthus and sugarcane in the Field JO - Appl Environ Microb VL - 77 UR - https://doi.org/10.1128/AEM.02996-10 DO - 10.1128/AEM.02996-10 ID - Shrestha2011 ER - TY - JOUR AU - Kanokratana, P. AU - Mhuantong, W. AU - Laothanachareon, T. AU - Tangphatsornruang, S. AU - Eurwilaichitr, L. AU - Pootanakit, K. PY - 2013 DA - 2013// TI - Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site JO - Microb Ecol VL - 66 UR - https://doi.org/10.1007/s00248-013-0209-0 DO - 10.1007/s00248-013-0209-0 ID - Kanokratana2013 ER - TY - JOUR AU - Kanokratana, P. AU - Eurwilaichitr, L. AU - Pootanakit, K. AU - Champreda, V. PY - 2015 DA - 2015// TI - Identification of glycosyl hydrolases from a metagenomic library of microflora in sugarcane bagasse collection site and their cooperative action on cellulose degradation JO - J Biosci Bioeng VL - 119 UR - https://doi.org/10.1016/j.jbiosc.2014.09.010 DO - 10.1016/j.jbiosc.2014.09.010 ID - Kanokratana2015 ER - TY - JOUR AU - Batista García, R. AU - Casasanero, R. AU - Alvarez-Castillo, A. AU - Dobson, A. AU - Folch-Mallol, J. PY - 2016 DA - 2016// TI - Prokaryotic diversity from the culture-independent taxonomic analysis of a sugarcane bagasse metagenome JO - Merit Res J Microbiol Biol Sci VL - 4 ID - Batista García2016 ER - TY - JOUR AU - Wongwilaiwalin, S. AU - Laothanachareon, T. AU - Mhuantong, W. AU - Tangphatsornruang, S. AU - Eurwilaichitr, L. AU - Igarashi, Y. PY - 2013 DA - 2013// TI - Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia JO - Appl Microbiol Biot VL - 97 UR - https://doi.org/10.1007/s00253-013-4699-y DO - 10.1007/s00253-013-4699-y ID - Wongwilaiwalin2013 ER - TY - JOUR AU - Alvarez, T. M. AU - Paiva, J. H. AU - Ruiz, D. M. AU - Cairo, J. P. AU - Pereira, I. O. AU - Paixao, D. A. PY - 2013 DA - 2013// TI - Structure and function of a novel cellulase 5 from sugarcane soil metagenome JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0083635 DO - 10.1371/journal.pone.0083635 ID - Alvarez2013 ER - TY - JOUR AU - Alvarez, T. M. AU - Goldbeck, R. AU - Santos, C. R. AU - Paixao, D. A. AU - Goncalves, T. A. AU - Franco Cairo, J. P. PY - 2013 DA - 2013// TI - Development and biotechnological application of a novel endoxylanase family GH10 identified from sugarcane soil metagenome JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0070014 DO - 10.1371/journal.pone.0070014 ID - Alvarez2013 ER - TY - JOUR AU - Heiss-Blanquet, S. AU - Fayolle-Guichard, F. AU - Lombard, V. AU - Hebert, A. AU - Coutinho, P. M. AU - Groppi, A. PY - 2016 DA - 2016// TI - Composting-like conditions are more efficient for enrichment and diversity of organisms containing Cellulase-encoding genes than submerged cultures JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0167216 DO - 10.1371/journal.pone.0167216 ID - Heiss-Blanquet2016 ER - TY - JOUR AU - Mello, B. L. AU - Alessi, A. M. AU - McQueen-Mason, S. AU - Bruce, N. C. AU - Polikarpov, I. PY - 2016 DA - 2016// TI - Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep38781 DO - 10.1038/srep38781 ID - Mello2016 ER - TY - JOUR AU - Ventorino, V. AU - Aliberti, A. AU - Faraco, V. AU - Robertiello, A. AU - Giacobbe, S. AU - Ercolini, D. PY - 2015 DA - 2015// TI - Exploring the microbiota dynamics related to vegetable biomasses degradation and study of lignocellulose-degrading bacteria for industrial biotechnological application JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep08161 DO - 10.1038/srep08161 ID - Ventorino2015 ER - TY - JOUR AU - Ventorino, V. AU - Ionata, E. AU - Birolo, L. AU - Montella, S. AU - Marcolongo, L. AU - Chiaro, A. PY - 2016 DA - 2016// TI - Lignocellulose-adapted Endo-Cellulase producing Streptomyces strains for bioconversion of cellulose-based materials JO - Front Microbiol VL - 7 UR - https://doi.org/10.3389/fmicb.2016.02061 DO - 10.3389/fmicb.2016.02061 ID - Ventorino2016 ER - TY - JOUR AU - Lagier, J. -. C. AU - Dubourg, G. AU - Million, M. AU - Cadoret, F. AU - Bilen, M. AU - Fenollar, F. PY - 2018 DA - 2018// TI - Culturing the human microbiota and culturomics JO - Nat Rev Microbiol VL - 16 UR - https://doi.org/10.1038/s41579-018-0041-0 DO - 10.1038/s41579-018-0041-0 ID - Lagier2018 ER - TY - JOUR AU - Batista-Garcia, R. A. AU - Sanchez-Carbente, M. D. AU - Talia, P. AU - Jackson, S. A. AU - O'Leary, N. D. AU - Dobson, A. D. W. PY - 2016 DA - 2016// TI - From lignocellulosic metagenomes to lignocellulolytic genes: trends, challenges and future prospects JO - Biofuels Bioprod Biorefin VL - 10 UR - https://doi.org/10.1002/bbb.1709 DO - 10.1002/bbb.1709 ID - Batista-Garcia2016 ER - TY - STD TI - Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny JBH. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. Mbio. 2017;8:e01809–17. ID - ref34 ER - TY - JOUR AU - Nilsson, R. o. l. f. H. e. n. r. i. k. AU - Larsson, K. a. r. l. -. H. e. n. r. i. k. AU - Taylor, A. n. d. y. F.  . S. AU - Bengtsson-Palme, J. o. h. a. n. AU - Jeppesen, T. h. o. m. a. s. S. AU - Schigel, D. m. i. t. r. y. AU - Kennedy, P. e. t. e. r. AU - Picard, K. a. t. h. r. y. n. AU - Glöckner, F. r. a. n. k. O. l. i. v. e. r. AU - Tedersoo, L. e. h. o. AU - Saar, I. r. j. a. AU - Kõljalg, U. r. m. a. s. AU - Abarenkov, K. e. s. s. y. PY - 2018 DA - 2018// TI - The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications JO - Nucleic Acids Research VL - 47 UR - https://doi.org/10.1093/nar/gky1022 DO - 10.1093/nar/gky1022 ID - Nilsson2018 ER - TY - JOUR AU - Yaegashi, J. AU - Kirby, J. AU - Ito, M. AU - Sun, J. AU - Dutta, T. AU - Mirsiaghi, M. PY - 2017 DA - 2017// TI - Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts JO - Biotechnol Biofuels. VL - 10 UR - https://doi.org/10.1186/s13068-017-0927-5 DO - 10.1186/s13068-017-0927-5 ID - Yaegashi2017 ER - TY - JOUR AU - Zhu, Z. W. AU - Zhang, S. F. AU - Liu, H. W. AU - Shen, H. W. AU - Lin, X. P. AU - Yang, F. PY - 2012 DA - 2012// TI - A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides JO - Nat Commun VL - 3 UR - https://doi.org/10.1038/ncomms2112 DO - 10.1038/ncomms2112 ID - Zhu2012 ER - TY - JOUR AU - Castanha, R. F. AU - Mariano, A. P. AU - Morais, L. A. S. AU - Scramin, S. AU - Monteiro, R. T. R. PY - 2014 DA - 2014// TI - Optimization of lipids production by Cryptococcus laurentii 11 using cheese whey with molasses JO - Braz J Microbiol VL - 45 UR - https://doi.org/10.1590/S1517-83822014000200003 DO - 10.1590/S1517-83822014000200003 ID - Castanha2014 ER - TY - JOUR AU - Ramírez-Castrillón, M. AU - Jaramillo-Garcia, V. P. AU - Rosa, P. D. AU - Landell, M. F. AU - Vu, D. AU - Fabricio, M. F. PY - 2017 DA - 2017// TI - The Oleaginous Yeast Meyerozyma guilliermondii BI281A as a New Potential Biodiesel Feedstock: Selection and Lipid Production Optimization JO - Frontiers Microbiol VL - 8 UR - https://doi.org/10.3389/fmicb.2017.01776 DO - 10.3389/fmicb.2017.01776 ID - Ramírez-Castrillón2017 ER - TY - JOUR AU - Abrao, F. O. AU - Duarte, E. R. AU - Pessoa, M. S. AU - Santos, V. L. D. AU - Freitas Junior, L. F. AU - Barros, K. O. PY - 2017 DA - 2017// TI - Notable fibrolytic enzyme production by Aspergillus spp. isolates from the gastrointestinal tract of beef cattle fed in lignified pastures JO - Plos One VL - 12 UR - https://doi.org/10.1371/journal.pone.0183628 DO - 10.1371/journal.pone.0183628 ID - Abrao2017 ER - TY - JOUR AU - Lim, Y. AU - Kim, K. AU - Park, U. PY - 2013 DA - 2013// TI - Isolation of Lecythophora sp. YP363, a secretor of various thermostable plant cell wall-degrading enzymes with high activity JO - Afr J Microbiol Res VL - 7 ID - Lim2013 ER - TY - JOUR AU - Petrosyan, P. AU - García-Varela, M. AU - Luz-Madrigal, A. AU - Huitrón, C. AU - Flores, M. E. PY - 2003 DA - 2003// TI - Streptomyces mexicanus sp. nov., a xylanolytic micro-organism isolated from soil JO - Int J Syst Evol Microbiol VL - 53 UR - https://doi.org/10.1099/ijs.0.02251-0 DO - 10.1099/ijs.0.02251-0 ID - Petrosyan2003 ER - TY - JOUR AU - Yilmaz, P. AU - Kottmann, R. AU - Field, D. AU - Knight, R. AU - Cole, J. R. AU - Amaral-Zettler, L. PY - 2011 DA - 2011// TI - Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1823 DO - 10.1038/nbt.1823 ID - Yilmaz2011 ER - TY - JOUR AU - Lee, B. D. AU - Apel, W. A. AU - Sheridan, P. P. AU - DeVeaux, L. C. PY - 2018 DA - 2018// TI - Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism JO - Biotechnol Biofuels VL - 11 UR - https://doi.org/10.1186/s13068-018-1110-3 DO - 10.1186/s13068-018-1110-3 ID - Lee2018 ER - TY - JOUR AU - Yang, W. AU - Bai, Y. AU - Yang, P. AU - Luo, H. AU - Huang, H. AU - Meng, K. PY - 2015 DA - 2015// TI - A novel bifunctional GH51 exo-α-l-arabinofuranosidase/endo-xylanase from Alicyclobacillus sp. A4 with significant biomass-degrading capacity JO - Biotechnol Biofuels VL - 8 UR - https://doi.org/10.1186/s13068-015-0366-0 DO - 10.1186/s13068-015-0366-0 ID - Yang2015 ER - TY - JOUR AU - Lee, B. D. AU - Apel, W. A. AU - DeVeaux, L. C. AU - Sheridan, P. P. PY - 2017 DA - 2017// TI - Concurrent metabolism of pentose and hexose sugars by the polyextremophile Alicyclobacillus acidocaldarius JO - J Ind Microbiol Biotechnol VL - 44 UR - https://doi.org/10.1007/s10295-017-1968-2 DO - 10.1007/s10295-017-1968-2 ID - Lee2017 ER - TY - JOUR AU - Goto, K. AU - Mochida, K. AU - Kato, Y. AU - Asahara, M. AU - Fujita, R. AU - An, S. -. Y. PY - 2007 DA - 2007// TI - Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov JO - Int J Syst Evol Microbiol VL - 57 UR - https://doi.org/10.1099/ijs.0.64692-0 DO - 10.1099/ijs.0.64692-0 ID - Goto2007 ER - TY - JOUR AU - Mavromatis, K. AU - Sikorski, J. AU - Lapidus, A. AU - Glavina Del Rio, T. AU - Copeland, A. AU - Tice, H. PY - 2010 DA - 2010// TI - Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) JO - Stand Genomic Sci VL - 2 UR - https://doi.org/10.4056/sigs.591104 DO - 10.4056/sigs.591104 ID - Mavromatis2010 ER - TY - JOUR AU - Myers, M. R. AU - King, G. M. PY - 2016 DA - 2016// TI - Isolation and characterization of Acidobacterium ailaaui sp. nov., a novel member of Acidobacteria subdivision 1, from a geothermally heated Hawaiian microbial mat JO - Int J Syst Evol Microbiol VL - 66 UR - https://doi.org/10.1099/ijsem.0.001516 DO - 10.1099/ijsem.0.001516 ID - Myers2016 ER - TY - JOUR AU - Yabe, S. AU - Aiba, Y. AU - Sakai, Y. AU - Hazaka, M. AU - Yokota, A. PY - 2010 DA - 2010// TI - Thermosporothrix hazakensis gen. Nov., sp. nov., isolated from compost, description of Thermosporotrichaceae fam. Nov. within the class Ktedonobacteria Cavaletti et al. 2007 and emended description of the class Ktedonobacteria JO - Int J Syst Evol Microbiol VL - 60 UR - https://doi.org/10.1099/ijs.0.018069-0 DO - 10.1099/ijs.0.018069-0 ID - Yabe2010 ER - TY - JOUR AU - Yabe, S. AU - Sakai, Y. AU - Yokota, A. PY - 2016 DA - 2016// TI - Thermosporothrix narukonensis sp. nov., belonging to the class Ktedonobacteria, isolated from fallen leaves on geothermal soil, and emended description of the genus Thermosporothrix JO - Int J Syst Evol Microbiol VL - 66 UR - https://doi.org/10.1099/ijsem.0.001004 DO - 10.1099/ijsem.0.001004 ID - Yabe2016 ER - TY - JOUR AU - Davis, J. R. AU - Goodwin, L. A. AU - Woyke, T. AU - Teshima, H. AU - Bruce, D. AU - Detter, C. PY - 2012 DA - 2012// TI - Genome sequence of Amycolatopsis sp. strain ATCC 39116, a plant biomass-degrading actinomycete JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.00186-12 DO - 10.1128/JB.00186-12 ID - Davis2012 ER - TY - JOUR AU - Houbraken, J. AU - Spierenburg, H. AU - Frisvad, J. C. PY - 2012 DA - 2012// TI - Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species JO - Antonie Van Leeuwenhoek VL - 101 UR - https://doi.org/10.1007/s10482-011-9647-1 DO - 10.1007/s10482-011-9647-1 ID - Houbraken2012 ER - TY - JOUR AU - Martínez, P. M. AU - Appeldoorn, M. M. AU - Gruppen, H. AU - Kabel, M. A. PY - 2016 DA - 2016// TI - The two Rasamsonia emersonii α-glucuronidases, ReGH67 and ReGH115, show a different mode-of-action towards glucuronoxylan and glucuronoxylo-oligosaccharides JO - Biotechnol Biofuels. VL - 9 UR - https://doi.org/10.1186/s13068-016-0519-9 DO - 10.1186/s13068-016-0519-9 ID - Martínez2016 ER - TY - JOUR AU - Tuohy, M. G. AU - Coughlan, M. P. PY - 1992 DA - 1992// TI - Production of thermostable xylan-degrading enzymes by Talaromyces emersonii JO - Bioresour Technol VL - 39 UR - https://doi.org/10.1016/0960-8524(92)90131-G DO - 10.1016/0960-8524(92)90131-G ID - Tuohy1992 ER - TY - JOUR AU - Wang, K. AU - Luo, H. AU - Bai, Y. AU - Shi, P. AU - Huang, H. AU - Xue, X. PY - 2014 DA - 2014// TI - A thermophilic endo-1,4-β-glucanase from Talaromyces emersonii CBS394.64 with broad substrate specificity and great application potentials JO - Appl Microbiol Biot. VL - 98 UR - https://doi.org/10.1007/s00253-014-5680-0 DO - 10.1007/s00253-014-5680-0 ID - Wang2014 ER - TY - JOUR AU - Yilmaz, N. AU - Visagie, C. M. AU - Houbraken, J. AU - Frisvad, J. C. AU - Samson, R. A. PY - 2014 DA - 2014// TI - Polyphasic taxonomy of the genus Talaromyces JO - Stud Mycol VL - 78 UR - https://doi.org/10.1016/j.simyco.2014.08.001 DO - 10.1016/j.simyco.2014.08.001 ID - Yilmaz2014 ER - TY - JOUR AU - He, R. AU - Bai, X. AU - Cai, P. AU - Sun, C. AU - Zhang, D. AU - Chen, S. PY - 2017 DA - 2017// TI - Genome sequence of Talaromyces piceus 9–3 provides insights into lignocellulose degradation JO - 3 Biotech VL - 7 UR - https://doi.org/10.1007/s13205-017-1001-5 DO - 10.1007/s13205-017-1001-5 ID - He2017 ER - TY - JOUR AU - Eugenio, L. I. AU - Méndez-Líter, J. A. AU - Nieto-Domínguez, M. AU - Alonso, L. AU - Gil-Muñoz, J. AU - Barriuso, J. PY - 2017 DA - 2017// TI - Differential β-glucosidase expression as a function of carbon source availability in Talaromyces amestolkiae: a genomic and proteomic approach JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0844-7 DO - 10.1186/s13068-017-0844-7 ID - Eugenio2017 ER - TY - JOUR AU - Nieto-Dominguez, M. AU - Eugenio, L. I. AU - Barriuso, J. AU - Prieto, A. AU - Fernandez de Toro, B. AU - Canales-Mayordomo, A. PY - 2015 DA - 2015// TI - Novel pH-stable glycoside hydrolase family 3 beta-Xylosidase from Talaromyces amestolkiae: an enzyme displaying Regioselective Transxylosylation JO - Appl Environ Microbiol VL - 81 UR - https://doi.org/10.1128/AEM.01744-15 DO - 10.1128/AEM.01744-15 ID - Nieto-Dominguez2015 ER - TY - JOUR AU - Guais, O. AU - Borderies, G. AU - Pichereaux, C. AU - Maestracci, M. AU - Neugnot, V. AU - Rossignol, M. PY - 2008 DA - 2008// TI - Proteomics analysis of “Rovabio™ excel”, a secreted protein cocktail from the filamentous fungus Penicillium funiculosum grown under industrial process fermentation JO - J Ind Microbiol Biotechnol VL - 35 UR - https://doi.org/10.1007/s10295-008-0430-x DO - 10.1007/s10295-008-0430-x ID - Guais2008 ER - TY - JOUR AU - Chi, Z. M. AU - Wang, F. AU - Chi, Z. AU - Yue, L. X. AU - Liu, G. L. AU - Zhang, T. PY - 2009 DA - 2009// TI - Bioproducts from Aureobasidium pullulans, a biotechnologically important yeast JO - Appl Microbiol Biot. VL - 82 UR - https://doi.org/10.1007/s00253-009-1882-2 DO - 10.1007/s00253-009-1882-2 ID - Chi2009 ER - TY - JOUR AU - Gostincar, C. AU - Ohm, R. A. AU - Kogej, T. AU - Sonjak, S. AU - Turk, M. AU - Zajc, J. PY - 2014 DA - 2014// TI - Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-549 DO - 10.1186/1471-2164-15-549 ID - Gostincar2014 ER - TY - JOUR AU - Kudanga, T. AU - Mwenje, E. PY - 2005 DA - 2005// TI - Extracellular cellulase production by tropical isolates of Aureobasidium pullulans JO - Can J Microbiol VL - 51 UR - https://doi.org/10.1139/w05-053 DO - 10.1139/w05-053 ID - Kudanga2005 ER - TY - JOUR AU - McHunu, N. P. AU - Permaul, K. AU - Abdul Rahman, A. Y. AU - Saito, J. A. AU - Singh, S. AU - Alam, M. PY - 2013 DA - 2013// TI - Xylanase Superproducer: genome sequence of a compost-loving Thermophilic fungus, Thermomyces lanuginosus strain SSBP JO - Genome Announc . VL - 1 UR - https://doi.org/10.1128/genomeA.00388-13 DO - 10.1128/genomeA.00388-13 ID - McHunu2013 ER - TY - JOUR AU - Martinez, D. AU - Larrondo, L. F. AU - Putnam, N. AU - Gelpke, M. D. S. AU - Huang, K. AU - Chapman, J. PY - 2004 DA - 2004// TI - Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 JO - Nat Biotechnol VL - 22 UR - https://doi.org/10.1038/nbt967 DO - 10.1038/nbt967 ID - Martinez2004 ER - TY - JOUR AU - Hassanpour, M. AU - Cai, G. AU - Gebbie, L. K. AU - Speight, R. E. AU - Junior Te'o, V. S. AU - O'Hara, I. M. PY - 2019 DA - 2019// TI - Co-utilization of acidified glycerol pretreated-sugarcane bagasse for microbial oil production by a novel Rhodosporidium strain JO - Engineering Life Sci VL - 19 UR - https://doi.org/10.1002/elsc.201800127 DO - 10.1002/elsc.201800127 ID - Hassanpour2019 ER - TY - JOUR AU - Sarkar, S. AU - Chakravorty, S. AU - Mukherjee, A. AU - Bhattacharya, D. AU - Bhattacharya, S. AU - Gachhui, R. PY - 2018 DA - 2018// TI - De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation JO - Gene. VL - 645 UR - https://doi.org/10.1016/j.gene.2017.12.014 DO - 10.1016/j.gene.2017.12.014 ID - Sarkar2018 ER - TY - JOUR AU - Berka, R. M. AU - Grigoriev, I. V. AU - Otillar, R. AU - Salamov, A. AU - Grimwood, J. AU - Reid, I. PY - 2011 DA - 2011// TI - Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1976 DO - 10.1038/nbt.1976 ID - Berka2011 ER - TY - JOUR AU - Sharmin, F. AU - Wakelin, S. AU - Huygens, F. AU - Hargreaves, M. PY - 2013 DA - 2013// TI - Firmicutes dominate the bacterial taxa within sugar-cane processing plants JO - Sci Rep VL - 3 UR - https://doi.org/10.1038/srep03107 DO - 10.1038/srep03107 ID - Sharmin2013 ER - TY - JOUR AU - Xu, J. PY - 2016 DA - 2016// TI - Fungal DNA barcoding JO - Genome. VL - 59 UR - https://doi.org/10.1139/gen-2016-0046 DO - 10.1139/gen-2016-0046 ID - Xu2016 ER - TY - JOUR AU - Toju, H. AU - Tanabe, A. S. AU - Yamamoto, S. AU - Sato, H. PY - 2012 DA - 2012// TI - High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples JO - Plos One VL - 7 UR - https://doi.org/10.1371/journal.pone.0040863 DO - 10.1371/journal.pone.0040863 ID - Toju2012 ER - TY - JOUR AU - Xu, X. M. AU - Passey, T. AU - Wei, F. AU - Saville, R. AU - Harrison, R. J. PY - 2015 DA - 2015// TI - Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry JO - Hortic Res-England VL - 2 UR - https://doi.org/10.1038/hortres.2015.22 DO - 10.1038/hortres.2015.22 ID - Xu2015 ER - TY - JOUR AU - Asemaninejad, A. AU - Weerasuriya, N. AU - Gloor, G. B. AU - Lindo, Z. AU - Thorn, R. G. PY - 2016 DA - 2016// TI - New primers for discovering fungal diversity using nuclear large ribosomal DNA JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0159043 DO - 10.1371/journal.pone.0159043 ID - Asemaninejad2016 ER - TY - JOUR AU - Zhang, L. AU - Ma, H. AU - Zhang, H. AU - Xun, L. AU - Chen, G. AU - Wang, L. PY - 2015 DA - 2015// TI - Thermomyces lanuginosus is the dominant fungus in maize straw composts JO - Bioresour Technol VL - 197 UR - https://doi.org/10.1016/j.biortech.2015.08.089 DO - 10.1016/j.biortech.2015.08.089 ID - Zhang2015 ER - TY - JOUR AU - Kuo, H. -. W. AU - Zeng, J. -. K. AU - Wang, P. -. H. AU - Chen, W. -. C. PY - 2015 DA - 2015// TI - A novel Exo-Glucanase explored from a Meyerozyma sp. Fungal Strain JO - Adv Enzyme Res VL - 3 UR - https://doi.org/10.4236/aer.2015.33006 DO - 10.4236/aer.2015.33006 ID - Kuo2015 ER - TY - JOUR AU - Schmidt, S. K. AU - Vimercati, L. AU - Darcy, J. L. AU - Arán, P. AU - Gendron, E. M. S. AU - Solon, A. J. PY - 2017 DA - 2017// TI - A Naganishia in high places: functioning populations or dormant cells from the atmosphere? JO - Mycology. VL - 8 UR - https://doi.org/10.1080/21501203.2017.1344154 DO - 10.1080/21501203.2017.1344154 ID - Schmidt2017 ER - TY - JOUR AU - Selvakumar, P. AU - Sivashanmugam, P. PY - 2018 DA - 2018// TI - Study on lipid accumulation in novel oleaginous yeast Naganishia liquefaciens NITTS2 utilizing pre-digested municipal waste activated sludge: a low-cost feedstock for biodiesel production JO - Appl Biochem Biotechnol VL - 186 UR - https://doi.org/10.1007/s12010-018-2777-4 DO - 10.1007/s12010-018-2777-4 ID - Selvakumar2018 ER - TY - CHAP AU - Cadete, R. M. AU - Lopes, M. R. AU - Rosa, C. A. ED - Buzzini, P. ED - Lachance, M. -. A. ED - Yurkov, A. PY - 2017 DA - 2017// TI - Yeasts associated with decomposing plant material and rotting wood BT - Yeasts in natural ecosystems: diversity PB - Springer International Publishing CY - Cham UR - https://doi.org/10.1007/978-3-319-62683-3_9 DO - 10.1007/978-3-319-62683-3_9 ID - Cadete2017 ER - TY - JOUR AU - Carvalho, A. F. A. AU - PdO, N. AU - Zaghetto de Almeida, P. AU - Bueno da Silva, J. AU - Escaramboni, B. AU - Pastore, G. M. PY - 2015 DA - 2015// TI - Screening of Xylanolytic Aspergillus fumigatus for prebiotic Xylooligosaccharide production using bagasse JO - Food Technol Biotechnol VL - 53 ID - Carvalho2015 ER - TY - JOUR AU - Liu, D. AU - Li, J. AU - Zhao, S. AU - Zhang, R. AU - Wang, M. AU - Miao, Y. PY - 2013 DA - 2013// TI - Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatusZ5 in the presence of different carbon sources JO - Biotechnol Biofuels. VL - 6 UR - https://doi.org/10.1186/1754-6834-6-149 DO - 10.1186/1754-6834-6-149 ID - Liu2013 ER - TY - JOUR AU - Borstlap, C. J. AU - Witt, R. N. AU - Botha, A. AU - Volschenk, H. PY - 2019 DA - 2019// TI - Draft genome sequence of the lignocellulose-degrading Ascomycete Coniochaeta pulveracea CAB 683 JO - Microbiol Res Announc VL - 8 ID - Borstlap2019 ER - TY - JOUR AU - Jiménez, D. J. AU - Hector, R. E. AU - Riley, R. AU - Lipzen, A. AU - Kuo, R. C. AU - Amirebrahimi, M. PY - 2017 DA - 2017// TI - Draft genome sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic fungus for bioabatement of inhibitors in plant biomass Hydrolysates JO - Genome Announc VL - 5 UR - https://doi.org/10.1128/genomeA.01476-16 DO - 10.1128/genomeA.01476-16 ID - Jiménez2017 ER - TY - CHAP AU - Lane, D. J. ED - Stackebrandt, E. ED - Goodfellow, M. PY - 1991 DA - 1991// TI - 16S/23S rRNA Sequencing BT - Nucleic acid techniques in bacterial systematic PB - Wiley CY - New York ID - Lane1991 ER - TY - JOUR AU - Bellemain, E. AU - Carlsen, T. AU - Brochmann, C. AU - Coissac, E. AU - Taberlet, P. AU - Kauserud, H. PY - 2010 DA - 2010// TI - ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases JO - BMC Microbiol VL - 10 UR - https://doi.org/10.1186/1471-2180-10-189 DO - 10.1186/1471-2180-10-189 ID - Bellemain2010 ER - TY - JOUR AU - Kurtzman, C. P. AU - Robnett, C. J. PY - 1997 DA - 1997// TI - Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5′ end of the large-subunit (26S) ribosomal DNA gene JO - J Clin Microbiol VL - 35 UR - https://doi.org/10.1128/JCM.35.5.1216-1223.1997 DO - 10.1128/JCM.35.5.1216-1223.1997 ID - Kurtzman1997 ER - TY - JOUR AU - Klindworth, A. AU - Pruesse, E. AU - Schweer, T. AU - Peplies, J. AU - Quast, C. AU - Horn, M. PY - 2013 DA - 2013// TI - Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks808 DO - 10.1093/nar/gks808 ID - Klindworth2013 ER - TY - JOUR AU - Albanese, D. AU - Fontana, P. AU - Filippo, C. AU - Cavalieri, D. AU - Donati, C. PY - 2015 DA - 2015// TI - MICCA: a complete and accurate software for taxonomic profiling of metagenomic data JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep09743 DO - 10.1038/srep09743 ID - Albanese2015 ER -