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Table 2 Identification of 16S rRNA gene fragments selected from PCR-DGGE of the B. oleae faeces. Taxonomic identification was achieved using different sequence similarity thresholds: a similarity ≥97% was used for species level identification, while similarities of 95, 90, 85, 80 and 75% were used for assignment at the genus, family, order, class and phylum levels, respectively [31]

From: Horizontal transfer and finalization of a reliable detection method for the olive fruit fly endosymbiont, Candidatus Erwinia dacicola

Isolate PCR-DGGE band

Nearest match (GenBank accession no.; % sequence similarity)

Taxonomic classification

FA1

Ewingella americana CIP81.94 (NR_104925; 99%)

Ewingella americana

FA2

Rosenbergiella collisarenosi 8.8A (NR_126304; 99%)

Rosenbergiella collisarenosi

FA3

Erwinia aphidicola Och2N7 (NR_104724; 99%)

Erwinia aphidicola

FA4

Enterobacter muelleri JM-458 (NR_104647; 100%)

Enterobacter muelleri

FA5

Serratia marcescens NBRC102204 (NR_114043; 99%)

Serratia marcescens

FA6

Rahnella woolbedingensis FRB227 (NR_146848; 99%)

Rahnella woolbedingensis

FA7

Morganella morganii DSM14850 (NR_043751; 99%)

Morganella morganii

FA8

Leclercia adecarboxylata CIP82.92 (NR_104933; 91%)

unclassified Enterobacteriaceae

FA9

Morganella morganii DSM14850 (NR_043751; 99%)

Morganella morganii

FA10

Lactococcus taiwanensis 0905C15 (NR_114327; 95%)

unclassified Lactococcus

FA11

Cedecea lapagei DSM4587 (NR_126318; 99%)

Cedecea lapagei

FA12

Enterobacter muelleri JM-458 (NR_104647; 100%)

Enterobacter muelleri

FA13

Erwinia aphidicola Och2N7 (NR_104724; 99%)

Erwinia aphidicola

FA15

Acidibacter ferrireducens MCF85 (NR_126260; 95%)

unclassified Acidibacter

FM1

Ca. Erwinia dacicola clone htB (NR_667589; 100%)

Ca. Erwinia dacicola

FM2

Serratia marcescens NBRC102204 (NR_114043; 99%)

Serratia marcescens

FM3

Acinetobacter septicus AK001 (NR_116071; 100%)

Acinetobacter septicus