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Table 1 Top 40 most frequent sequences from the naive library and after 2 rounds of biopanning

From: The next generation of biopanning: next gen sequencing improves analysis of bacterial display libraries

 

Naive Library

No. Seqs

Round 1

No. Seqs

Round 2

No. Seqs

1

L

32

VLPQTSFFAATCRRS

115

CHISPEKRRLIVCAD

4619

2

P

31

SNRLRGENLTFRRHK

110

YPLCSTYGNVLVGGS

3989

3

R

30

DRRRKIERYDAQISV

89

PLKQGIYETTSTKGT

3321

4

S

22

T

87

YGSRTFPVCSTVHRR

2185

5

A

19

S

84

YRLMEMEEYHKDVFA

1985

6

T

13

PAKGSIKNPILLGIR

74

KHLLCVMQGGTAFRG

1783

7

E

12

QPLSESLEDKTSIDV

74

RIFGFLSCKPNIIKL

1094

8

H

11

SS

73

IVNRMWCLISVISQA

921

9

SP

11

THNARRLMPCIDASD

73

FWGLYPLFCCTGCSP

909

10

Y

11

YPGRMEALFAHVSNA

73

SKLFSSWVLCACWHC

778

11

Q

10

RDPSWRAETVNCGNL

69

AVLAIYPNSLYWLQA

656

12

TT

10

RHQNPQEEI

69

YIAMILHGFSQAFPG

650

13

V

10

YTYHGRNSERLLRMK

69

LLFSFFNCFTGNDGQ

636

14

F

9

TQDETRRGGMSTTSS

68

NKWSPRTDFNTESVR

623

15

GPCLETCLTA

9

HTYCVHPSMATCWHY

66

HAPWECLISVLASAH

616

16

ERSVG

8

ANLPDSHHIAHNKDT

65

ARGLLTAISFYAFQC

602

17

LT

8

AMPDFVILDHGVTRR

64

RLWMRSPTSTAGGIR

601

18

PRKTLKGTLTVPSYI

8

KNSLTCCYG

63

AERLHQITVMLLRSF

595

19

SG

8

RRNYIHIGAKAAGRS

63

LSNLLHYLYALGQPG

595

20

SKAPLRKTNMKLR

8

DVLAKYSSLERQDLP

62

PILLCYVLYCEYASS

587

21

TS

8

SVAATCWRYWYDKPL

62

SWTMLICQLHSYLYT

583

22

ATYYLQPYVPISEET

7

RPPCEEMSINCPGVT

61

PRALWEASMVVTLAC

581

23

DQLGVL

7

TYPCIYA

61

AVCKPVGPKAPWRDR

575

24

GPWATWSSYDKWHNR

7

VSLIDQCDCTMQSNP

61

SSRSLQQNSISRLSM

571

25

GT

7

HRRRKPIHLPEYPLP

60

IRKQWDFLCLGFLLS

559

26

KS

7

RHSICPRFRGLLPHS

60

SAFPACGLASYFPWF

554

27

PCNFISKHFVPHRRH

7

RML

60

GVVRHCPAWQKSPWP

532

28

PIVGVYK

7

ARTSG

59

HSALDVLSWVISSLM

532

29

PR

7

DWMKFHVEA

59

GLRIQAYALCYWEPV

526

30

SFLL

7

GPANWTCAWQAVTAF

59

NRAIIGEIAGLIKFL

522

31

TD

7

LLVKLGP

59

PAAAFFTQVMSLLRQ

503

32

WD

7

RGVGTSHPQSVCVKP

59

RLHCLERYINLAFLP

503

33

YT

7

CIT

58

RMHHLMFRDSHSHTD

502

34

AMTSLPSTCRQLHSN

6

WLHGVLLNFKKHGVC

58

TQKHKTLCFSIRKPG

494

35

AQDRVRLKSFGRASL

6

IHSAGRMSINLCVGI

57

LRYGIWQVSHIALTS

492

36

CQFNVWANLARIAIG

6

IRRTLLGRPVWFFEE

57

QSFVMESVLSFGFSF

492

37

EDGPTRLWPLSRAAW

6

RSSRSVDPLTYRRNA

57

DRRRKIERYDAQISV

486

38

FSLTVFVMDQENVNR

6

YQPWREDRRSSAGSA

57

PHKLWRLGCFVAMDL

485

39

GDSEGLRMSTLGSSS

6

GLVRVFWPTPERGHR

56

KTVFCLTVLPRFEAA

482

40

GTIGFLDLPRKTVMR

6

AVKAYSTFRQSPTRL

55

RHLVSWLCTVLHPDP

481