Transformant | Luc activity 3rd subculture | Luc activity 20th subculture | Chr # | Insertion point | Gene name | Gene annotation | Gene expression (FPKM) |
---|---|---|---|---|---|---|---|
CPS ± sd | CPS ± sd | ||||||
Transformation method: Agrobacterium | |||||||
B 20 | 9 ± 2 | 8 ± 1 | 8 | Gene (3′ UTR) | Cre08.g381050 | Senescence-associated gene 12 | 4.65 |
A 14 | 38 ± 11 | 18 ± 2 | 1 | Gene (exon) | Cre01.g051900 | Ubiquinol-cytochrome C reductase iron-sulfur subunit | 166.65 |
B 9 | 5 ± 1 | 64 ± 12 | 12 | Gene (5′UTR) | Cre12.g486000 | n.a. | 1.49 |
B 12 | 7 ± 1 | 69 ± 13 | 17 | Gene (exon) | Cre17.g736700 | n.a. | 0 |
A 18 | 48 ± 10 | 16 ± 2 | 1 | Gene (exon) | Cre01.g015250 | DNA binding; DNA-directed DNA polymerases | 4.13 |
A 6 | 13,306 ± 1218 | 6979 ± 926 | 3 | Gene (exon) | Cre03.g204200 | n.a. | 0 |
A 7 | 19,240 ± 1945 | 21,210 ± 1694 | n.d. | n.d. | n.d. | n.d. | n.d. |
B 4 | 15,202 ± 2795 | 8006 ± 1259 | 9 | Gene (5′UTR) | Cre09.g398067 | Rotamase FKBP 1 | 9.45 |
B 6 | 12,460 ± 1239 | 7751 ± 643 | 17 | Gene (exon) | Cre17.g699600 Cre08.g377150 | Sedoheptulose-bisphosphatase | 14.62 |
8 | Gene (exon) | n.a. | 18.19 | ||||
B 11 | 16,458 ± 892 | 8762 ± 831 | 8 | Gene (3′ UTR) | Cre08.g379400 | n.a. | 2.95 |
Transformation method: Electroporation | |||||||
A 2 | 7 ± 3 | 49 ± 6 | 12 | Gene (3′ UTR) | Cre12.g560450 | n.a. | 3.08 |
A 3 | 2 ± 0 | 68 ± 9 | 1 | Gene (exon) | Cre01.g014150 | MATE efflux family protein | 5.20 |
4 | Gene (exon) | Cre04.g223550 | n.a. | 0.42 | |||
A 4 | 4 ± 1 | 24 ± 5 | 13 | Gene: 3′ UTR | Cre13.g569850 | Ammonium transporter 1;2 | 0.89 |
A 5 | 37 ± 11 | 61 ± 7 | 12 | Gene (exon) | Cre12.g559450 | Calcium-dependent lipid-binding family protein | 37.98 |
A 7 | 1 ± 1 | 21 ± 5 | 11 | Gene (exon) | Cre11.g467556 | n.a. | 2.73 |
5 | Gene (5′UTR) | Cre05.g232100 | n.a. | 6.87 | |||
A 10 | 17,849 ± 1022 | 16,393 ± 3650 | 3 | Gene (3′ UTR) | Cre03.g186050 | n.a. | 1.26 |
A 11 | 11,347 ± 645 | 3932 ± 771 | 2 | 2 Genes, both 3′UTR | Cre02.g098700; | ABC-2 type transporter family protein | 0.63 |
Intergenic region | Cre02.g098750 | STELAR K+ outward rectifier | 2.77 | ||||
8 | / | / | |||||
B 11 | 17,253 ± 1316 | 20,099 ± 2464 | 3 | Gene (intron) | Cre03.g165700 | Pyruvate decarboxylase-2 | 87.52 |
A 18 | 13,348 ± 753 | 15,958 ± 1918 | 3 | Intergenic region | / | / | / |
B 18 | 12,482 ± 499 | 13,977 ± 1959 | 16 | Intergenic region | / | / | / |