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Table 4 Comparison of the genes that were down-regulated (fold change) in SCNT placentas versus in aggregated SCNT placentas

From: Abnormal gene expression in regular and aggregated somatic cell nuclear transfer placentas

Gene symbol Accession No. Folder Δ SCNT/Agg Folder Δ SCNT/Con Folder Δ Agg/Con
C6 NM_016704.1 −2.05** −1.75* 1.17
5033414D02Rik NM_026362.1 −2.04** −1.86* 1.10
Sftpd NM_009160.1 −4.68** −4.14** 1.13
Tph1 NM_009414.2 −4.20** −2.65* 1.59
2010109I03Rik NM_025929.2 −4.04** −2.75** 1.47
Amn NM_033603.2 −3.55** −4.03** −1.14
Cbx7 NM_144811.3 −3.46** −3.10** 1.12
Osta NM_145932.3 −3.40** −2.88* 1.18
Entpd2 NM_009849.1 −3.30** −3.64** −1.10
Bex4 NM_212457.1 −3.26** −3.50** −1.07
Serpina10 NM_144834.3 −3.25** −2.39* 1.36
Fga NM_010196.1 −3.18** −3.51** −1.10
1700045I19Rik NM_028842.1 −3.13** −3.47** −1.11
Fga NM_010196.2 −3.10** −3.47** −1.12
BC040758 NM_001033364.1 −2.99** −3.34** −1.12
Maob NM_172778.1 −2.99* −2.95* 1.01
BC040758 NM_001033364.1 −2.97** −3.34* −1.12
Fcgrt NM_010189.1 −2.94** −2.75** 1.07
Cldn2 NM_016675.3 −2.91** −2.93** −1.01
Psca NM_028216.1 −2.90** −4.43** −1.53
1600015I10Rik NM_001081273.1 −2.89** −4.64** −1.61
Bex2 XM_977338.1 −2.88** −2.52* 1.14
Apom NM_018816.1 −2.81** −3.27** −1.16
8430408G22Rik NM_145980.1 −2.77** −2.12* 1.31
Acox2 NM_053115.1 −2.74** −2.53** 1.08
Spp2 NM_029269.1 −2.74** −2.91** −1.06
Muc13 NM_010739.1 −2.03* −2.09** −1.03
Lcn2 NM_008491.1 −2.01* −2.42** −1.20
Slpi NM_011414.2 −2.18** −4.56** −2.09
Aig1 NM_025446.1 −2.81** −1.09 2.57
Wfdc2 NM_026323.2 −2.02* −1.01 2.00
Snca NM_009221.2 −2.86** −1.56 1.84
Eraf NM_133245.1 −2.84** −1.61 1.77
Snca NM_009221.2 −2.66** −1.42 1.87
Slco2b1 NM_175316.3 −2.64** −1.88 1.41
Hpx NM_017371.1 −2.52* −1.70 1.49
1810007E14Rik NM_025308.1 −2.52** −1.66 1.52
Slc4a1 NM_011403.1 −2.49** −1.48 1.68
Alas2 NM_009653.1 −2.46** −1.41 1.75
Ctsh NM_007801.1 −2.43** −1.97 1.24
Ttr NM_013697.3 −2.34* −1.65 1.42
Dnmt3l NM_019448.2 −2.31** −1.36 1.69
Abhd14b NM_029631.2 −2.25* −1.77 1.27
Cish NM_009895.3 −2.22* −1.99 1.12
Vdr NM_009504.2 −2.22** −1.89 1.17
Dnmt3l NM_001081695.1 −2.21** −1.40 1.58
Gstm1 NM_010358.4 −2.19* −1.67 1.31
Magi1 NM_001029850.2 −2.18** −1.21 1.80
Upk3b NM_175309.3 −2.16* −1.70 1.27
Clic6 NM_172469.3 −2.16* −1.73 1.24
LOC100044204 XM_001471696.1 −2.14** −1.88 1.14
Igfbp2 NM_008342.2 −2.12** −1.65 1.29
Vdr NM_009504.3 −2.65** −2.19* 1.21
Itih3 NM_008407.1 −2.63** −2.64* −1.00
Apoa2 NM_013474.1 −2.59** −2.77* −1.07
Tfrc NM_011638.3 −2.56** −3.08** −1.20
Kng1 NM_023125.2 −2.56** −3.07* −1.20
Fcgr3 NM_010188.4 −2.52** −2.56* −1.02
Dab2 NM_001008702.1 −2.48** −2.34* 1.06
Gldc NM_138595.1 −2.47* −2.66** −1.08
Serpina1b NM_009244.4 −2.45** −2.80** −1.14
Tfrc NM_011638.3 −2.44** −2.87** −1.18
Cfi NM_007686.2 −2.43** −2.20* 1.10
Ltf NM_008522.3 −2.40** −2.30** 1.05
Gpc3 NM_016697.2 −2.38** −2.50* −1.05
Mgst1 NM_019946.3 −2.37** −2.51* −1.06
Fgg NM_133862.1 −2.36** −2.95** −1.25
Nr1h4 NM_009108.1 −2.33** −3.16* −1.35
Kng1 NM_023125.2 −2.32** −2.87** −1.24
Slc7a9 NM_021291.1 −2.28* −3.04* −1.34
Slc7a9 NM_021291.1 −2.27** −2.82* −1.24
Irf6 NM_016851.2 −2.25** −2.43* −1.08
Trf NM_133977.2 −2.19** −2.37** −1.08
Sema4a NM_013658.2 −2.16* −2.60* −1.20
Serpina1b NM_009244.4 −2.16** −2.62** −1.21
Gipc2 NM_016867.1 −2.15** −2.56* −1.19
Kng2 NM_201375.1 −2.15** −2.59* −1.20
Igfbp6 NM_008344.2 −2.06** −3.64* −1.76
Ostb NM_178933.2 −2.08** −1.83 1.14
Pmp22 NM_008885.2 −2.06* −1.98 1.04
Fbp2 NM_007994.3 −3.62** −2.27 1.59
Apoa4 NM_007468.2 −3.25** −3.06 1.06
Bex2 NM_009749.1 −3.19** −2.71 1.18
Eps8l3 NM_133867.1 −3.00** −2.13 1.40
Slc23a3 NM_194333.3 −2.92** −2.97 −1.02
Lbp NM_008489.2 −2.89** −2.39 1.21
Pdzk1ip1 NM_026018.2 −2.81** −2.62 1.07
Upk3b NM_175309.3 −2.78** −2.27 1.23
Sepp1 NM_009155.3 −2.74** −2.60 1.06
Cyp2c70 NM_145499.1 −2.65** −2.28 1.16
Fmo1 NM_010231.2 −2.59** −2.44 1.06
Upk3b NM_175309.3 −2.43** −2.05 1.19
Rnase4 NM_201239 −2.32** −2.76 −1.19
Apoc1 NM_007469.3 −2.31* −2.07 1.11
Apoc1 NM_007469.3 −2.30* −2.07 1.11
Gpc3 NM_016697.2 −2.25* −2.23 1.01
Timd2 NM_134249.3 −2.16* −2.39 −1.11
Pcdh24 NM_001033364.2 −2.15** −2.29 −1.07
Gldc NM_138595.1 −2.12** −2.18 −1.03
Bglap-rs1 NM_031368.3 −2.03* −2.13 −1.05
Abcc10 NM_170680.2 −2.93** 1.01 2.96*
Prss22 NM_133731.1 −2.70** −1.11 2.44*
  1. Significantly reduced in SCNT
  2. *p < 0.05; **p < 0.01