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Table 2 Genes that were down-regulated (fold change) in SCNT placentas versus in control placentas

From: Abnormal gene expression in regular and aggregated somatic cell nuclear transfer placentas

Gene symbol Accession No. Folder Δ SCNT/Con Folder Δ Agg/Con Gene symbol Accession No. Folder Δ SCNT/Con Folder Δ Agg/Con
1300017J02Rik NM_027918.1 −2.67** −1.34 Cbx7 NM_144811.3 −3.10** 1.12
Ly6g6c NM_023463.3 −3.82** −1.92 Osta NM_145932.3 −2.88* 1.18
Pcyox1 NM_025823 −2.16** −1.10 Entpd2 NM_009849.1 −3.64** −1.10
Lamb3 NM_008484.2 −2.94* −1.53 Bex4 NM_212457.1 −3.50** −1.07
Ang NM_007447.2 −2.26* −1.20 Serpina10 NM_144834.3 −2.39* 1.36
Bmp4 NM_007554.2 −2.59** −1.42 Fga NM_010196.1 −3.51** −1.10
LOC100046120 XM_001475611.1 −2.62** −1.51 1700045I19Rik NM_028842.1 −3.47** −1.11
Aqp8 NM_007474.1 −2.32** −1.36 Fga NM_010196.2 −3.47** −1.12
Heph NM_010417.1 −2.52* −1.51 BC040758 NM_001033364.1 −3.34** −1.12
Serping1 NM_009776.1 −2.35** −1.43 Maob NM_172778.1 −2.95* 1.01
Doxl2 NM_001029987.1 −2.18** −1.33 BC040758 NM_001033364.1 −3.34** −1.12
Saa3 NM_011315.3 −2.95** −1.79 Fcgrt NM_010189.1 −2.75** 1.07
Aqp8 NM_007474.1 −2.19** −1.34 Gdpd3 NM_024228.2 −3.60** −1.23
Klk4 NM_019928.1 −2.79** −1.72 Cldn2 NM_016675.3 −2.93** −1.01
Serpind1 NM_008223.2 −2.67* −1.67 Psca NM_028216.1 −4.43** −1.53
Abp1 NM_029638.1 −2.06** −1.33 1600015I10Rik NM_001081273.1 −4.64** −1.61
Krt14 NM_016958.1 −2.11* −1.42 Bex2 XM_977338.1 −2.52* 1.14
Scg5 NM_009162.3 −2.77* −1.95 Apom NM_018816.1 −3.27** −1.16
Mustn1 NM_181390.2 −2.05* −1.65 8430408G22Rik NM_145980.1 −2.12* 1.31
Tacstd2 NM_020047.3 −2.07** −1.71 Acox2 NM_053115.1 −2.53** 1.08
Sfrp5 NM_018780.2 −2.02** −1.88 Spp2 NM_029269.1 −2.91** −1.06
Sftpd NM_009160.1 −4.14** 1.13 Vdr NM_009504.3 −2.19* 1.21
Tph1 NM_009414.2 −2.65* 1.59 Itih3 NM_008407.1 −2.64* −1.00
2010109I03Rik NM_025929.2 −2.75** 1.47 Spink3 NM_009258.2 −2.81* −1.08
Amn NM_033603.2 −4.03** −1.14 Apoa2 NM_013474.1 −2.77* −1.07
Gene symbol Accession No. Folder Δ SCNT/Con Folder Δ Agg/Con Gene symbol Accession No. Folder Δ SCNT/Con* Folder Δ Agg/Con
Significantly reduced in NT Significantly reduced in NT
Tfrc NM_011638.3 −3.08** −1.20 C3 NM_009778.1 −2.23* −1.06
Kng1 NM_023125.2 −3.07* −1.20 Igfbp6 NM_008344.2 −3.64** −1.76
Fcgr3 NM_010188.4 −2.56* −1.02 Popdc3 NM_024286.1 −3.68** −1.79
Dab2 NM_001008702.1 −2.34** 1.06 Muc13 NM_010739.1 −2.09** −1.03
Gldc NM_138595.1 −2.66** −1.08 Lcn2 NM_008491.1 −2.42* −1.20
Serpina1b NM_009244.4 −2.80** −1.14 Inhba NM_008380.1 −2.81** −2.25
Tfrc NM_011638.3 −2.87** −1.18 Chac1 NM_026929.3 −2.27* −2.09
Cfi NM_007686.2 −2.20* 1.10 Nrn1l NM_175024.3 −2.49* −2.49*
Ltf NM_008522.3 −2.30** 1.05 Tnfrsf11b NM_008764.3 −2.15* −2.30
Gpc3 NM_016697.2 −2.50* −1.05 Slpi NM_011414.2 −4.56** −2.09
Mgst1 NM_019946.3 −2.51* −1.06     
Fgg NM_133862.1 −2.95** −1.25 Significantly reduced in aggregation
Nr1h4 NM_009108.1 −3.16* −1.35 Nppb NM_008726.3 −1.46 −3.14**
Dab2 NM_023118.1 −2.31 1.01 1200015F23Rik NM_001033136.2 −1.00 −2.71*
Kng1 NM_023125.2 −2.87 −1.24 Uap1 NM_133806.4 1.27 −2.72**
Slc7a9(prob1) NM_021291.1 −3.04 −1.34 Ctsm NM_022326.3 1.12 −4.82**
Slc7a9(prob2) NM_021291.1 −2.82 −1.24     
Irf6 NM_016851.2 −2.43 −1.08     
Trf NM_133977.2 −2.37 −1.08     
Serpina1d NM_009246.3 −2.59 −1.19     
Sema4a NM_013658.2 −2.60 −1.20     
Serpina1b NM_009244.4 −2.62 −1.21     
Gipc2 NM_016867.1 −2.56 −1.19     
Kng2 NM_201375.1 −2.59 −1.20     
Slc27a2 NM_011978.2 −2.96 −1.40     
  1. *Significantly reduced in NT alone, *p < 0.05; **p < 0.01