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Table 2 A summary of HMMER search results

From: Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology

E-value cutoff

True positives

False positives

True negatives

False negatives

Specificity

Sensitivity

3.10E-21

222

48

84,882

11

0.9994

0.9528

3.10E-18

230

52

84,870

3

0.9994

0.9871

2.10E-15

231

52

84,869

2

0.9994

0.9914

2.10E-13

232

55

84,865

1

0.9994

0.9957

2.10E-10

233

64

84,855

0

0.9992

1.0000

  1. Summary of sensitivity and specificity of 85,152 HMMER queries against pfam as a method for selecting an appropriate cutoff e-value for the identification of PF00005 (ABC transporter) domains