Genomic variation and DNA repair associated with soybean transgenesis: a comparison to cultivars and mutagenized plants

Table 2 Summary of SV frequency in Inter-cultivar, Fast Neutron (FN), and Transgenic genotypic classes

		Inter-Cultivar	FN Mutant Phenotype	FN No-Phenotype	Transgenic
Unique Up CNV Genes	Total genes in class	223	3253	2118	2
	Maximum among genotypes	124	2312	1568	2
	Median among genotypes	83	0	0	0
	Minimum among genotypes	45	0	0	0
Unique Down CNV Genes (homozygous or heterozygous deletions)	Total genes in class	1126	987	1231	4
	Maximum among genotypes	362	290	236	4
	Median among genotypes	244	48	12	0
	Minimum among genotypes	156	0	0	0
Up SV (homozygous duplications)	Total genic segments in class	117	11	9	1
	Mean Size	13,580 bp	4,671,937 bp	2,447,335 bp	6,434 bp
	Median Size	3,182 bp	2,802,275 bp	747,592 bp	6,434 bp
Down SV (homozygous or heterozygous deletion)	Total genic segments in class	547	23	49	1
	Mean Size	14,958 bp	1,276,033 bp	515,051 bp	125,228 bp
	Median Size	2,775 bp	110,656 bp	131,036 bp	125,228 bp

ISSN: 1472-6750