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Table 3 Accuracy and refinement of structural analogs of predicted model 1 determined on the basis of TM-Score

From: Purification, biochemical characterization and structural modelling of alkali-stable β-1,4-xylan xylanohydrolase from Aspergillus fumigatus R1 isolated from soil

Rank

TM-scorea

RMSDb

IDENC

Cov.d

PDB Hit

1

0.833

0.61

0.646

0.842

2vgdA

2

0.829

0.96

0.596

0.847

3b5lB

3

0.823

0.63

0.648

0.833

3wp3A

4

0.818

0.66

0.614

0.829

1xndA

5

0.817

0.69

0.688

0.829

1xnkA

6

0.805

0.86

0.652

0.820

3zseA

7

0.803

1.04

0.495

0.825

1h4gB

8

0.803

1.32

0.619

0.829

1pvxA

9

0.802

1.07

0.612

0.825

1ynaA

10

0.802

1.08

0.825

0.825

2dcjB

  1. aMeasure of structural similarity between predicted model and the native structure
  2. bRoot mean squared deviation between residues that are structurally aligned by TM-align
  3. cPercentage sequence identity in the structurally aligned region
  4. dCoverage of the alignment by TM-align = number of structurally aligned residues divided by length of the model