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Table 5 Comparison of the conserved amino acid positions following antigen selection

From: Defining the complementarities between antibodies and haptens to refine our understanding and aid the prediction of a successful binding interaction

 

Pre-selection

Post-selection

Heavy

Light (λ)

Heavy

Light (λ)

FW1

3 (19,14, 20)

7 (3, 10, 11, 15, 19, 21, 23)

21 (2–15, 17–22, 25–28)

13 (3–7, 9, 11, 15, 16, 20–23)

FW2

3 (36, 45, 48)

2 (35, 47)

9 (36–43, 45)

6 (35, 40, 44, 45, 47, 48)

FW3

4 (82, 82c, 90, 92)

6 ( 61, 67, 73, 75, 82, 86)

24 (66, 67, 70–72, 74, 76-82c, 86–92)

23 (57–62, 64, 66, 70, 72–75, 77–79, 81–84, 86–88)

FW4

0

3 (99, 102, 104)

10 (103, 104, 106–113)

10 (98, 99, 101–108)

Total (FWs)

10

18

62

51

CDR1

0

0

1 (34)

4 (24, 25, 26, 33)

CDR2

0

0

2 (51, 63)

3 (54, 55, 56)

CDR3

0

0

1 (101)

0

Total (CDRs)

0

0

3

7

Total (chain)

10

18

65

58

  1. Analysis was conducted on the pre and post-selection sequences. A conserved site was defined as: a position (Kabat numbering [37]) in the post-selection clones where an amino acid remained unchanged or had similar bio-physical characteristics to the original pre-selection residues