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Table 2 Verification of array results

From: A microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

    Fold change
NCBI Accession number Putative identity Tree Array qRT-PCR
AY922315.1 Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) 108-L -1.0 -1.35 ± 0.09
   741-H 1.0 1.27 ± 0.01
   243-L -1.4 -2.04 ± 0.18
   1/71/6-HS 1.2 1.41 ± 0.01
   1/92/7-LS -1.2 -1.70 ± 0.05
   1/91/7-LS -1.0 -1.80 ± 0.01
   1/23/4-HS 1.4 2.02 ± 0.17
CT981136.1 Partial cDNA sequence of caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) from Eucalyptus gunnii 108-L -1.6 -3.95 ± 0.03
   741-H 1.6 3.45 ± 0.18
   243-L -1.2 -3.14 ± 0.01
   1/71/6-HS 1.4 3.45 ± 0.01
   1/92/7-LS 1.0 2.24 ± 0.10
   1/91/7-LS -1.4 -3.86 ± 0.16
   1/23/4-HS -1.0 -2.30 ± 0.03
Zp00567351.1 Protein-L-isoaspartate O-methyltransferase 108-L 1.4 1.53 ± 0.04
   741-H 1.2 1.57 ± 0.06
   243-L 1.4 1.67 ± 0.06
   1/71/6-HS 1.0 1.83 ± 0.06
   1/92/7-LS -1.4 -1.73 ± 0.05
   1/91/7-LS -1.4 -1.81 ± 0.02
   1/23/4-HS 1.0 1.68 ± 0.11
AJ841794.1 Populus × canadensis mRNA for putative histidine-containing phosphotransfer protein 2 (hpt2 gene), cultivar Dorskamp 108-L 1.2 1.38 ± 0.04
   741-H -1.0 -1.36 ± 0.04
   243-L -1.6 -2.38 ± 0.01
   1/71/6-HS 1.0 1.41 ± 0.01
   1/92/7-LS 1.0 1.51 ± 0.01
   1/91/7-LS 1.0 1.76 ± 0.05
   1/23/4-HS 1.2 1.84 ± 0.06
ABE86334.1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (Medicago trunculata) 108-L 1.0 1.18 ± 0.04
   741-H 1.0 1.38 ± 0.15
   243-L 1.0 1.21 ± 0.01
   1/71/6-HS -1.4 -1.40 ± 0.02
   1/92/7-LS 1.0 1.38 ± 0.08
   1/91/7-LS 1.2 1.62 ± 0.03
   1/23/4-HS 1.0 1.44 ± 0.01
  1. Confirmation of the expression patterns of five clusters by relative quantification of transcript abundance using qPCR. Fold change (± standard deviation) of a subset of E. grandis transcripts chosen for their functional relevance.