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Table 1 Differentially expressed transcripts of seven E. grandis trees and their putative functions

From: A microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

     Fold changea
Functional category NCBI Accession number Cluster Putative identity 1 2 3 4 5 6 7
Energy           
Glycolysis AAM94349.1 - Pyruvate kinase -1.0 -1.0 -1.4 1.2 1.0 1.0 1.4
Other AY674766.1 7 Sabia swinhoei NADH dehydrogenase subunit 1 gene, exons 2, 3 -1.2 -1.4 -1.4 1.2 1.0 1.0 1.2
Cell growth           
Cell growth AJ841794.1 5 Populus × canadensis mRNA for putative histidine-containing phosphotransfer protein 2 (hpt2 gene), cultivar Dorskamp 1.2 -1.0 -1.6 1.0 1.0 1.0 1.2
Transcription           
Posttranscriptional AAZ32862.1 2 Putative splicing factor Prp8 (Medicago sativa) 1.0 -1.2 -1.4 -1.4 1.2 1.4 -1.6
Protein synthesis           
Protein synthesis 023627 1 Putative glycyl tRNA synthetase, Arabidopsis thaliana 1.0 1.0 1.0 -1.6 1.2 1.0 1.2
Metabolism           
Metabolism ABE86334.1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (Medicago trunculata) 1.0 1.0 1.0 -1.4 1.0 1.2 1.0
Metabolism AAT12488.1 1 Copper chaperone (Populus alba × Populus tremula var. glandulosa) 1.2 1.0 1.0 -1.6 1.2 1.0 1.0
Metabolism AY686850.1 6 Streblus smithii voucher G. Weiblen 1172 (MIN) 26S ribosomal RNA, partial sequence 1.2 1.2 1.0 -1.4 1.0 1.2 -1.2
Protein phosphorylation AY227028.1 6 Chlamydomonas reinhardtii GMP synthetase gene 1.0 1.0 1.2 -1.6 1.0 1.2 -1.2
Cell biogenesis           
Cell wall CT981136.1 4 Partial cDNA sequence of caffeoyl-CoA 3-O-methyltransferase from Eucalyptus gunnii -1.6 1.6 1.2 -1.4 1.0 -1.4 -1.0
Unknown CAB80346.1 4 Ubiquitin – protein ligase-like protein (Arabidopsis thaliana) 1.4 1.6 1.0 1.2 1.0 -1.4 -1.0
Cell wall AJ627732 3 Putative xyloglucan endo-transglycosylase (XET) -1.2 1.2 -1.4 1.4 -1.0 -1.0 1.4
Cell wall AY922315.1 3 Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) -1.0 1.0 -1.4 1.2 -1.2 -1.0 1.4
Cell wall Zp00567351.1 5 Protein-L-isoaspartate O-methyltransferase 1.4 1.2 1.4 1.0 -1.4 -1.4 1.0
Cell wall Q59296 5 Catalase 1.4 1.0 1.4 1.2 -1.4 -1.4 1.2
Signal transduction           
Kinase Q42806 9 Pyruvate kinase, cytosolic isozyme (PK) -1.0 -1.0 -1.0 1.0 1.0 -1.2 -1.4
Hormone AJ508907.1 9 mRNA for allototropin (at gene) -1.0 -1.0 -1.2 1.2 1.2 -1.0 -1.4
Stress           
Transcription ABA98970.2 2 Putative Zinc-finger protein 1.2 -1.4 -1.0 -1.4 1.2 1.2 -1.6
Defense NP 172668.1 10 LRX1 Leucine-Rich Repeat/EXTENSIN 1 -1.0 1.4 -1.0 1.0 -1.0 -1.0 -1.0
Defense AAN62344 10 CTV.15 -1.2 1.2 -1.2 1.4 -1.0 -1.2 -1.0
Defense ABA91873.1 10 Lipase family protein -1.2 1.2 -1.4 1.2 -1.0 -1.2 1.2
Defense Q8CCP0 10 Antigen 1 -1.0 1.2 1.2 1.0 -1.2 -1.4 1.4
  1. aNumbers indicate individuals 1 (108-L), 2 (741-H), 3 (243-L), 4 (1/71/6-HS), 5 (1/92/7-LS), 6 (1/91/7-LS) and 7 (1/23/4-HS)