Table 1 Differentially expressed transcripts of seven E. grandis trees and their putative functions
| Â | Â | Â | Â | Fold changea | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Functional category | NCBI Accession number | Cluster | Putative identity | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
Energy | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Glycolysis | AAM94349.1 | - | Pyruvate kinase | -1.0 | -1.0 | -1.4 | 1.2 | 1.0 | 1.0 | 1.4 |
Other | AY674766.1 | 7 | Sabia swinhoei NADH dehydrogenase subunit 1 gene, exons 2, 3 | -1.2 | -1.4 | -1.4 | 1.2 | 1.0 | 1.0 | 1.2 |
Cell growth | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Cell growth | AJ841794.1 | 5 | Populus × canadensis mRNA for putative histidine-containing phosphotransfer protein 2 (hpt2 gene), cultivar Dorskamp | 1.2 | -1.0 | -1.6 | 1.0 | 1.0 | 1.0 | 1.2 |
Transcription | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Posttranscriptional | AAZ32862.1 | 2 | Putative splicing factor Prp8 (Medicago sativa) | 1.0 | -1.2 | -1.4 | -1.4 | 1.2 | 1.4 | -1.6 |
Protein synthesis | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Protein synthesis | 023627 | 1 | Putative glycyl tRNA synthetase, Arabidopsis thaliana | 1.0 | 1.0 | 1.0 | -1.6 | 1.2 | 1.0 | 1.2 |
Metabolism | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Metabolism | ABE86334.1 | 1 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (Medicago trunculata) | 1.0 | 1.0 | 1.0 | -1.4 | 1.0 | 1.2 | 1.0 |
Metabolism | AAT12488.1 | 1 | Copper chaperone (Populus alba × Populus tremula var. glandulosa) | 1.2 | 1.0 | 1.0 | -1.6 | 1.2 | 1.0 | 1.0 |
Metabolism | AY686850.1 | 6 | Streblus smithii voucher G. Weiblen 1172 (MIN) 26S ribosomal RNA, partial sequence | 1.2 | 1.2 | 1.0 | -1.4 | 1.0 | 1.2 | -1.2 |
Protein phosphorylation | AY227028.1 | 6 | Chlamydomonas reinhardtii GMP synthetase gene | 1.0 | 1.0 | 1.2 | -1.6 | 1.0 | 1.2 | -1.2 |
Cell biogenesis | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Cell wall | CT981136.1 | 4 | Partial cDNA sequence of caffeoyl-CoA 3-O-methyltransferase from Eucalyptus gunnii | -1.6 | 1.6 | 1.2 | -1.4 | 1.0 | -1.4 | -1.0 |
Unknown | CAB80346.1 | 4 | Ubiquitin – protein ligase-like protein (Arabidopsis thaliana) | 1.4 | 1.6 | 1.0 | 1.2 | 1.0 | -1.4 | -1.0 |
Cell wall | AJ627732 | 3 | Putative xyloglucan endo-transglycosylase (XET) | -1.2 | 1.2 | -1.4 | 1.4 | -1.0 | -1.0 | 1.4 |
Cell wall | AY922315.1 | 3 | Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) | -1.0 | 1.0 | -1.4 | 1.2 | -1.2 | -1.0 | 1.4 |
Cell wall | Zp00567351.1 | 5 | Protein-L-isoaspartate O-methyltransferase | 1.4 | 1.2 | 1.4 | 1.0 | -1.4 | -1.4 | 1.0 |
Cell wall | Q59296 | 5 | Catalase | 1.4 | 1.0 | 1.4 | 1.2 | -1.4 | -1.4 | 1.2 |
Signal transduction | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Kinase | Q42806 | 9 | Pyruvate kinase, cytosolic isozyme (PK) | -1.0 | -1.0 | -1.0 | 1.0 | 1.0 | -1.2 | -1.4 |
Hormone | AJ508907.1 | 9 | mRNA for allototropin (at gene) | -1.0 | -1.0 | -1.2 | 1.2 | 1.2 | -1.0 | -1.4 |
Stress | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Transcription | ABA98970.2 | 2 | Putative Zinc-finger protein | 1.2 | -1.4 | -1.0 | -1.4 | 1.2 | 1.2 | -1.6 |
Defense | NP 172668.1 | 10 | LRX1 Leucine-Rich Repeat/EXTENSIN 1 | -1.0 | 1.4 | -1.0 | 1.0 | -1.0 | -1.0 | -1.0 |
Defense | AAN62344 | 10 | CTV.15 | -1.2 | 1.2 | -1.2 | 1.4 | -1.0 | -1.2 | -1.0 |
Defense | ABA91873.1 | 10 | Lipase family protein | -1.2 | 1.2 | -1.4 | 1.2 | -1.0 | -1.2 | 1.2 |
Defense | Q8CCP0 | 10 | Antigen 1 | -1.0 | 1.2 | 1.2 | 1.0 | -1.2 | -1.4 | 1.4 |