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Table 6 QPCR analyses of candidate target mRNAs of EGS-35

From: Generation of an external guide sequence library for a reverse genetic screen in Caenorhabditis elegans

Candidate target

Primer for QPCR

Inhibition level

NM_060051.2

5'-AGTCCGGTTTACTCCAAAGCAA-3'

64%

 

5'-CCATGAGGCTTTCCAAATGC-3'

 

NM_076865.3

5'-TGGCGTTGCAGATAGAATAGGA-3'

8%

 

5'-GCCGAAAGCGACATAACCA-3'

 

NM_062956.2

5'-CACCAGTAACCCAACAACTCCTAAA-3'

6 ± 5%

 

5'-AAGGAGAATGCGACTGGGAAG-3'

 

NM_066665.3

5'-TTGAGGCGAAATGCTTGTCA-3'

7%

 

5'-TGATGGCAAAATCGATGCA-3'

 

NM_001029738.1

5'-TCGGAAACCAGGCAAACAAC-3'

5%

 

5'-GGTCATTGTGTGCCATTTCCTT-3'

 

NM_072205.2

5'-TTGGTTAGAAGCGAAGTGAGTGA-3'

9%

 

5'-AAGGGAGGAGGAAATCAAGAGG-3'

 

NM_061028.1

5'-AGAGCACACGGCACATAGGA-3'

5 ± 5%

 

5'-CTTGTTCGGGTCTGGGTTG-3'

 

NM_015227.4

5'-GCACCTCAGTCTCAACATTTTCTTT-3'

7%

 

5'-TCACACGCCTTCTCTTGGTCT-3'

 

NM_001047396.2

5'-GCTCCGATTCAAGTCATGTGG-3'

7 ± 5%

 

5'-GCAAGCCGAAGAGGTGATGT-3'

 

NM_001047395.1

5'-AGGAACACCAATGGTCACAATG-3'

7%

 

5'-GGAACTCCGAGAGCGTAAAGCT-3'

 

NM_074332.2

5'-TCGTTCTGTCACGGGGAAC-3'

5 ± 6%

 

5'-CTTCGCATCTTTTCCACCAAC-3'

 

NM_068962.3

5'-CATCGTCATCTAGTCTCCCAGTGT-3'

8%

 

5'-TTACTTCGTTTGGTTGGTGGTG-3'

 
  1. The accession number refers to the GenBank database. The values shown are means derived from triplicate experiments, and values for the standard deviation that were less than 5% are not shown.