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Table 1 List of the single-stranded oligodeoxynucleotides used to target the mutated genes

From: A comparison of synthetic oligodeoxynucleotides, DNA fragments and AAV-1 for targeted episomal and chromosomal gene repair

Name

Size

Sequence

Characteristics

Luc PO AS Ctr

35 b

5'-TGATTTGTATTCAGCCCCTATCGTTTCATAGCTTC-3'

Antisense Control phosphodiester ssODN

Luc PO S Ctr

35 b

5'-GAAGCTATGAAACGATAGGGGCTGAATACAAATCA-3'

Sense Control phosphodiester ssODN

Luc PS AS Ctr

35 b

5'-TsGsAsTTTGTATTCAGCCCCTATCGTTTCATAGCsTsTsC-3'

Antisense Control ssODN with 3 PS linkages at each end

Luc PS S Ctr

35 b

5'-GsAsAsGCTATGAAACGATAGGGGCTGAATACAAAsTsCsA-3'

Sense Control ssODN with 3 PS linkages at each end

Luc PS AS Ctr

45 b

5'-TsTsCsTGTGATTTGTATTCAGCCCCTATCGTTTCATAGCTTCTGsCsCsA-3'

Antisense Control ssODN with 3 PS linkages at each end

Luc PO AS Rep

35 b

5'-TGATTTGTATTCAGCCCATATCGTTTCATAGCTTC-3'

Antisense phosphodiester ssODN

Luc PO S Rep

35 b

5'-GAAGCTATGAAACGATATGGGCTGAATACAAATCA-3'

Sense phosphodiester ssODN

Luc PS AS Rep

35 b

5'-TsGsAsTTTGTATTCAGCCCATATCGTTTCATAGCsTsTsC-3'

Antisense ssODN with 3 PS linkages at each end

Luc PS S Rep

35 b

5'-GsAsAsGCTATGAAACGATATGGGCTGAATACAAAsTsCsA-3'

Sense ssODN with 3 PS linkages at each end

Luc PO AS Rep

45 b

5'-TTCTGTGATTTGTATTCAGCCCATATCGTTTCATAGCTTCTGCCA-3'

Antisense phosphodiester ssODN

Luc PS AS Rep

45 b

5'-TsTsCsTGTGATTTGTATTCAGCCCATATCGTTTCATAGCTTCTGsCsCsA-3'

Antisense ssODN with 3 PS linkages at each end

Luc PO S Rep

45 b

5'-TsGsGsCAGAAGCTATGAAACGATATGGGCTGAATACAAATCACAsGsAsA-3'

Sense ssODN with 3 PS linkages at each end

Luc LNA 1.1 AS Rep

45 b

5'-TTCTGTGATTTGTATTCAGCCCATATCGTTTCATAGCTTCTGCCA-3'

Antisense ssODN with 1 LNA residue at each end

Luc LNA 4.4 AS Rep

45 b

5'-TTCTGTGATTTGTATTCAGCCCATATCGTTTCATAGCTTCTGCCA-3'

Antisense ssODN with 4 LNA residues at each end

Luc LNA 4r AS Rep

45 b

5'-TTCTGTGATTTGTATTCAGCCCATATCGTTTCATAGCTTCTGCCA-3'

Antisense ssODN with 4 LNA residues distributed over the sequence

GFP PO AS Ctr

35 b

5'-TGGTCACGAGGGTTGGCTAGGGCACGGGCAGCTTG-3'

Antisense Control phosphodiester ssODN

GFP PS AS Ctr

35 b

5'-TsGsGsTCACGAGGGTTGGCTAGGGCACGGGCAGCsTsTsG-3'

Antisense Control ssODN with 3 PS linkages at each end

GFP PO AS Rep

35 b

5'-TGGTCACGAGGGTTGGCCAGGGCACGGGCAGCTTG-3'

Antisense phosphodiester ssODN

GFP PS AS Rep

35 b

5'-TsGsGsTCACGAGGGTTGGCCAGGGCACGGGCAGCsTsTsG-3'

Antisense ssODN with 3 PS linkages at each end

  1. Luc, luciferase; GFP, green fluorescent protein; AS, antisense; S, sense; Ctr, non-correcting control oligonucleotide; Rep, repair oligonucleotide; PO, phosphodiester; PS, phosphorothioate; LNA, locked nucleic acid (underlined); s, phosphorothioate linkage; in bold, position of the base to correct.