Figure 2
From: Better estimation of protein-DNA interaction parameters improve prediction of functional sites
Drift in estimated CAP binding energy between E. coli and S. typhimurium sorted in ascending order plotted against the rank. (A) Using energies estimated by weight matrix or QPMEME based on know sites. (B) Using energies estimated by weight matrix or QPMEME based on the SELEX sites. Note that, for QPMEME estimates based on SELEX data, the energy drift stays low for many sites, as would be expected of most functional CAP targets.