Figure 1
From: Better estimation of protein-DNA interaction parameters improve prediction of functional sites
Estimated binding energy versus log(Kd) with different training sets and methods. (A) Binding energies inferred using weight matrix method applied to known sites from literature. (B) Binding energies inferred using QPMEME method applied to known sites in literature. (C) Binding energies inferred using weight matrix method applied to SELEX sites obtained by this study. (D) Binding energies inferred using QPMEME method applied to SELEX sites obtained by this study.