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Table 1 Fluorescently labeled target oligonucleotides used in this study.

From: Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: Comparison of single base mismatches and base bulges

Name

 

Target sequence (5'→3')

Label

Length (nt)

URA

DNA

ACTACAAACTTAGAGTGCAG...

...CAGAGGGGAGTGGAATTC

5'-Cy3

38

NIE

DNA

ACTCGCAAGCACCACCCTATCA

3'-Cy3

22

LBE

DNA

GTGATGCTTGTATGGAGGAA...

...TACTGCGATT

3'-Cy3

30

PET

DNA

ACATCAGTGCCTGTGTACTAGGAC

3'-Cy3

24

BEI

DNA

ACGGAACTGAAAGCAAAGAC

3'-Cy3

20

COM

DNA

AACTCGCTATAATGACCTGGACTG

5'-Cy3

24

NCO

DNA

TAGTGGGAGTTGTTAGTGATGTGA

3'-Cy3

24

PET

RNA

ACAUCAGUGCCUGUGUACUAGGACA

5'-Cy3

25

LBE

RNA

GUGAUGCUUGUAUGGAGGAA

...UACUGCGAUUCGAU

5'-Cy3

34

COM

RNA

AACUCGCUAUAAUGACCUGGACUG

5'-Cy3

24

  1. Fluorescently labeled DNA and RNA target oligonucleotides.