Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells

Table 1 Sorted expression levels of 160 miRNA between FFPE and snap frozen cells using ΔΔCts. 65.58% of ΔΔCts (101 out of 154 determined assays), were between +1 and -1

Decreased expression	Increased expression	ΔΔCts between +/-1				Undeter-mined
mir-30b	mir-302b*	mir-9	mir-133b	mir-200a	mir-370	c-lin-4
mir-130a	mir-302a	mir-10a	mir-134	mir-200b	mir-371	mir-104
mir-218	let-7b	mir-15a	mir-137	mir-200c	mir-372	mir-122a
mir-30e	mir-184	mir-17-3p	mir-138	mir-203	mir-373	mir-144
mir-34a	mir-183	mir-17-5p	mir-140	mir-204	let-7d	mir-302b
mir-135a	mir-211	mir-23a	mir-142-5p	mir-210	let-7e	mir-325
mir-20	mir-128b	mir-23b	mir-145	mir-213	mir-2
mir-15b	mir-189	mir-25	mir-147	mir-214	let-7g
mir-135b	mir-128a	mir-26b	mir-148a	mir-215	let-7i
mir-31	mir-154	mir-27a	mir-149	mir-216	let-7a
mir-9*	mir-198	mir-27b	mir-150	mir-219	mir-16
mir-338	mir-139	mir-28	mir-151	mir-221
mir-190	mir-373*	mir-30a-3p	mir-152	mir-222
mir-133a	mir-100	mir-30c	mir-154*	mir-223
mir-29a	mir-323	mir-30d	mir-155	mir-224
mir-142-3p	mir-125b	mir-34b	mir-181a	mir-296
mir-141	mir-105	mir-34c	mir-181b	mir-299
mir-335	mir-182*	mir-92	mir-181c	mir-302c
mir-29c	mir-129	mir-96	mir-182	mir-302c*
mir-26a	mir-159a	mir-98	mir-185	mir-320
mir-220	mir-199a	mir-99a	mir-186	mir-324-5p
mir-374	mir-367	mir-103	mir-187	mir-326
mir-95	mir-107	mir-106a	mir-191	mir-328
mir-21		mir-124a	mir-193	mir-330
mir-302d		mir-124b	mir-194	mir-331
mir-29b		mir-125a	mir-195	mir-337
mir-301		mir-126	mir-197	mir-339
mir-205		mir-127	mir-199a*	mir-340
mir-19a		mir-130b	mir-199b	mir-342
mir-146		mir-132	mir-199-s	mir-368

ISSN: 1472-6750