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Table 2 Representative examples of complimentary bases between the displaced 3'-end (upper sequence) and the new template (lower sequence).

From: Mechanism of chimera formation during the Multiple Displacement Amplification reaction

ReadID  
075540_3218_3423 5'-CCGAAAATTACTCTACC-3'                       
                3'-TGGCTGTTACTGAGCGCTTAGGTCGT-5'
116645_2999_1485 5'-ATAAATTAAATGAATG-3'                         
                3'TACTCGAAAGGAGTGCTGACCCAGCCCG-5'
011550_4060_0841 5'-ACCACAACAGAACCTTCTTT-3'                     
                   3'GAAACTTTTACTGTTGTAGTAAGTG-5'
045228_3788_1694 5'-CCTCGTCGG-CGGTTTTCATC-3'                   
                   3'-GTAGAC-CTTACACGTTTTACCG-5'
045274_2234_1769 5'-TACGGTTGTATGCTGCGC-3'                      
               3'-ACGCGAACAGATATCCACCTCAAATGC-5'
127787_3000_2253 5'-CCAGCAGGGATTGCGTCATCGC-3'                   
                    3'-AGCGTATTGGGCATGGTTTCAGT-5'
106844_3069_3603 5'-ATGTAGCCAGCAACATTAT-3'                      
               3'-GTAATATTCGTTCTCGGTATGGGTTCTC-5'
002131_3149_2822 5'-GGCGACTATGCACTAGGGAA-3'                     
                 3'-CCCTTACGGACACGTTTAATCAAGAC-5'
175043_3546_0829 5'-ATCTGATAGTCCAGAAAACC-3'                     
                 3'-TTTGGTCGTAGTTGTTTCTCTAACCA-5'
114939_3307_2524 5'-CTTCGACGATACCCATGCCGGA-3'                   
                   3'-GGCCTTCTTCACGCATTTTGCTTGA-5
148627_3831_3379 5'-CCCATTGCCGTCGTACTTTTGATTGTT-3'              
                        3'-AACAATGAAGCCCGTTTCC-5'
004326_2840_3105 5'-CGCTGCGTGATTCCCACGCCGG-3'                
                     3'-GCGGCCATGCCTTTGG-CTTAACAG-5'
096255_3814_0862 5'-CCAGTGAATTTCACTTCGCCAACG-3'                 
                    3'-GGTTGCCCGACCGGGTGTTCAAC-5'
034769_3258_1412 5'-TGTACTAAAAGGGTAGTCAGAAAAA-3'                
                    3'-TCTTTTTGGTCCAGAGCTAAAAT-5'
151610_2448_0137 5'-GAGGCAACATTTGATCGTCAGTG-3'                 
                  3'-CAGTCATACTTTTCAGGCACCGTCG-5'
066589_3139_3159 5'-CGCCAGGAAACATTGCACACCACGC-3'                
                   3'-GTGGGGCGCTAGCGCTCCGTTTGG-5'
173672_2559_2768 5'-CATTCCCGGAATTACATATCTTT-3'                  
                 3'-TATAGAAAAAGTAATCCGTCACCGGA-5'
116413_2206_3333 5'-GCATATCTCCATCCTGAGTGACGC-3'                 
                 3'-CTCATTGCGAAAACCAACCCGCTCTT-5'
117929_3656_1113 5'-TTTGAAATATCCACTATTAAGCTAGTGTTTAACG-3'                 
                          3'-CACAAATTGCGTCGGAA-5'
058603_2536_1539 5'-CCGCATGCATGACCGTTTTTGTGAA-3'                
                3'-CAAAAACACTTAGAGTGGTTAGGGTTT-5'
127287_2649_1441 5'-GCGCACGTAGTTCGCAGGACGC-GGGT-3'              
               3'-CGTCCTGCGGCCCAAGACGACTAGCTAT-5'
  1. All examples are from the set of inverted chimeras for segments <10 kb apart. Base pairs between the 3'-end and the new template are shown in bold. (see Methods for Assignment of Chimeric Junctions).