Table 1 Sequences of the miRNA probes spotted on the specificity microarrays
miRNA annotationa | Probe sequence 5'-3' | Number of mismatches |
|---|---|---|
mmu-miR-124a [perfect] | ttttttttttttttttaaggcacgcggtgaatgcc | 0 |
mmu-miR-124a [5'-1] | tttttttttttttttcaaggcacgcggtgaatgcc | 1 |
mmu-miR-124a [5'-2] | tttttttttttttttcacggcacgcggtgaatgcc | 2 |
mmu-miR-124a [5'-3] | tttttttttttttttcacgacacgcggtgaatgcc | 3 |
mmu-miR-124a [5'-4] | tttttttttttttttcacgacccgcggtgaatgcc | 4 |
mmu-miR-124a [5'-5] | tttttttttttttttcacgaccctcggtgaatgcc | 5 |
mmu-miR-124a [5'-6] | tttttttttttttttcacgaccctcgttgaatgcc | 6 |
mmu-miR-124a [5'-7] | tttttttttttttttcacgaccctcgtttaatgcc | 7 |
mmu-miR-124a [3'-1] | ttttttttttttttttaaggcacgcggtgaatgcg | 1 |
mmu-miR-124a [3'-2] | ttttttttttttttttaaggcacgcggtgaatccg | 2 |
mmu-miR-124a [3'-3] | ttttttttttttttttaaggcacgcggtggatccg | 3 |
mmu-miR-124a [3'-4] | ttttttttttttttttaaggcacgcgggggatccg | 4 |
mmu-miR-124a [3'-5] | ttttttttttttttttaaggcacgccggggatccg | 5 |
mmu-miR-124a [3'-6] | ttttttttttttttttaaggcaccccggggatccg | 6 |
mmu-miR-124a [3'-7] | ttttttttttttttttaagccaccccggggatccg | 7 |
mmu-miR-213 [perfect] | tttttttttttttttaccatcgaccgttgattgtacc | 0 |
mmu-miR-213 [5'-1] | ttttttttttttttttccatcgaccgttgattgtacc | 1 |
mmu-miR-213 [5'-2] | ttttttttttttttttcgatcgaccgttgattgtacc | 2 |
mmu-miR-213 [5'-3] | ttttttttttttttttcgagcgaccgttgattgtacc | 3 |
mmu-miR-213 [5'-4] | ttttttttttttttttcgagcgagcgttgattgtacc | 4 |
mmu-miR-213 [5'-5] | ttttttttttttttttcgagcgagcgttgtttgtacc | 5 |
mmu-miR-213 [5'-6] | ttttttttttttttttcgagcgagcggtgtttgtacc | 6 |
mmu-miR-213 [5'-7] | ttttttttttttttttcgagcgagcggggtttgtacc | 7 |
mmu-miR-213 [3'-1] | tttttttttttttttaccatcgaccgttgattgtacg | 1 |
mmu-miR-213 [3'-2] | tttttttttttttttaccatcgaccgttgattgttcg | 2 |
mmu-miR-213 [3'-3] | tttttttttttttttaccatcgaccgttggttgttcg | 3 |
mmu-miR-213 [3'-4] | tttttttttttttttaccatcgaccgctggttgttcg | 4 |
mmu-miR-213 [3'-5] | tttttttttttttttaccatcgatcgctggttgttcg | 5 |
mmu-miR-213 [3'-6] | tttttttttttttttaccatctatcgctggttgttcg | 6 |
mmu-miR-213 [3'-7] | tttttttttttttttaccatgtatcgctggttgttcg | 7 |