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Table 1 Sequences of the miRNA probes spotted on the specificity microarrays

From: Target labelling for the detection and profiling of microRNAs expressed in CNS tissue using microarrays

miRNA annotationa Probe sequence 5'-3' Number of mismatches
mmu-miR-124a [perfect] ttttttttttttttttaaggcacgcggtgaatgcc 0
mmu-miR-124a [5'-1] tttttttttttttttcaaggcacgcggtgaatgcc 1
mmu-miR-124a [5'-2] tttttttttttttttcacggcacgcggtgaatgcc 2
mmu-miR-124a [5'-3] tttttttttttttttcacgacacgcggtgaatgcc 3
mmu-miR-124a [5'-4] tttttttttttttttcacgacccgcggtgaatgcc 4
mmu-miR-124a [5'-5] tttttttttttttttcacgaccctcggtgaatgcc 5
mmu-miR-124a [5'-6] tttttttttttttttcacgaccctcgttgaatgcc 6
mmu-miR-124a [5'-7] tttttttttttttttcacgaccctcgtttaatgcc 7
mmu-miR-124a [3'-1] ttttttttttttttttaaggcacgcggtgaatgcg 1
mmu-miR-124a [3'-2] ttttttttttttttttaaggcacgcggtgaatccg 2
mmu-miR-124a [3'-3] ttttttttttttttttaaggcacgcggtggatccg 3
mmu-miR-124a [3'-4] ttttttttttttttttaaggcacgcgggggatccg 4
mmu-miR-124a [3'-5] ttttttttttttttttaaggcacgccggggatccg 5
mmu-miR-124a [3'-6] ttttttttttttttttaaggcaccccggggatccg 6
mmu-miR-124a [3'-7] ttttttttttttttttaagccaccccggggatccg 7
mmu-miR-213 [perfect] tttttttttttttttaccatcgaccgttgattgtacc 0
mmu-miR-213 [5'-1] ttttttttttttttttccatcgaccgttgattgtacc 1
mmu-miR-213 [5'-2] ttttttttttttttttcgatcgaccgttgattgtacc 2
mmu-miR-213 [5'-3] ttttttttttttttttcgagcgaccgttgattgtacc 3
mmu-miR-213 [5'-4] ttttttttttttttttcgagcgagcgttgattgtacc 4
mmu-miR-213 [5'-5] ttttttttttttttttcgagcgagcgttgtttgtacc 5
mmu-miR-213 [5'-6] ttttttttttttttttcgagcgagcggtgtttgtacc 6
mmu-miR-213 [5'-7] ttttttttttttttttcgagcgagcggggtttgtacc 7
mmu-miR-213 [3'-1] tttttttttttttttaccatcgaccgttgattgtacg 1
mmu-miR-213 [3'-2] tttttttttttttttaccatcgaccgttgattgttcg 2
mmu-miR-213 [3'-3] tttttttttttttttaccatcgaccgttggttgttcg 3
mmu-miR-213 [3'-4] tttttttttttttttaccatcgaccgctggttgttcg 4
mmu-miR-213 [3'-5] tttttttttttttttaccatcgatcgctggttgttcg 5
mmu-miR-213 [3'-6] tttttttttttttttaccatctatcgctggttgttcg 6
mmu-miR-213 [3'-7] tttttttttttttttaccatgtatcgctggttgttcg 7
  1. a. The numbers in the square parenthesis represent the location and number of mismatches on the probes.
  2. The nucleotide bases in bold represent the substitutions that were made to the original miRNA sequence.