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Table 2 Test of NERVE settings on another dataset including 6 proteomes.

From: NERVE: New Enhanced Reverse Vaccinology Environment

Pathogen Strain Known protective antigens (non cytoplasmic, ≤2 TMs) Primary accession numbers (Uniprot database) References
Staphylococcus aureus MW2 Spa, PBP2A, ClfA, collagen-binding, fibronectin-binding, enterotoxin A, alpha-toxin Q8NXT0 Q8NWP5 P0A0L1 Q8NUH0 Q8NUU7 Q8NX49 Q8NXJ1 [37–39]
Neisseria gonorrhoeae ATCC 700825 PorB, TbpA, TbpB Q5F5V7 Q5F6Q4 Q5F6Q3 [40,41]
Streptococcus pyogenes M1 SF370 Spy0128, Spy0130, Spy0843, Spy1357, Spy1274, Spy1390, Spy0416, Spy2010, Spy2018 P60811 Q7DAL7 Q99ZD7 Q9A0C0 Q9A180 Q9A1S0 Q9A1S2 P58099 Q99XV0 [42]
Campylobacter jejuni NCTC 11168 FlaA, cjaA P56963 Q9PNV7 [43,44]
Helicobacter pylori J99 CagA, VacA, NAP Q9ZKW5 Q9ZLT1 Q9ZMJ1 [45]
Chlamydia pneumoniae CWL029 MOMP, Pmp2, ArtJ, HtrA, OmpH-like P27455 Q9Z3A1 Q9Z869 Q9Z6T0 Q9Z8N7 [46,46]