Skip to main content

Table 1 Tuning NERVE settings on a known dataset including 10 proteomes.

From: NERVE: New Enhanced Reverse Vaccinology Environment

Pathogen Strain Known protective antigens (non cytoplasmic, ≤2 TMs) Primary accession numbers (Uniprot database) References
Bacillus anthracis AMES ANCESTOR PA83, Sap, EA1, AhpC P13423 P49051 P94217 Q81Y83 [7,22]
Pseudomonas aeruginosa ATCC 15692 OprI, OprF P11221 P13794 [23–25]
Yersinia pestis CO-92 Caf1, LcrV, YscF P26948 P21206 Q7ARI0 [26,27]
Streptococcus agalactiae V 2603 V/R Sip, GBS67, GBS80 Q8E2F6 Q8DYR5 Q8E0S9 [8]
Streptococcus agalactiae III NEM316 Sip, GBS67, GBS80, C5a-ase Q8E7W4 Q8E4C3 Q8E6E4 Q8E4T9 [8]
Streptococcus agalactiae Ia A909 Sip, GBS67, GBS80, C5a-ase, C protein alpha-antigen, C protein beta-antigen Q3K3Z5 Q3K246 Q3K250 Q3K0M1 Q02192 Q3K3P4 [8]
Neisseria meningitidis B MC58 NspA, PorA, TbpA, TbpB, GNA33, GNA992, NadA, App, GNA1870 Q7DDM2 Q51240 Q9K0U9 Q9K0V0 Q7DDU3 Q7DDJ2 Q9JXK7 Q9JXL6 Q9JXV4 [12]
Porphyromonas gingivalis W83 FimA, HagA, HagB, PG32, PG33 P59914 P59915 Q7MTI5 Q9S3R9 Q9S3R8 [29–32]
Borrelia burgdorferi B31 OspA, OspC, BBI16 P14013 Q07337 O50870 [33–35]
Chlamydia trachomatis D UW-3/Cx MOMP, OMP3, OMP2 Q46409 P21355 P38006 [36]