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Table 1 Tuning NERVE settings on a known dataset including 10 proteomes.

From: NERVE: New Enhanced Reverse Vaccinology Environment

Pathogen

Strain

Known protective antigens (non cytoplasmic, ≤2 TMs)

Primary accession numbers (Uniprot database)

References

Bacillus anthracis

AMES ANCESTOR

PA83, Sap, EA1, AhpC

P13423 P49051 P94217 Q81Y83

[7,22]

Pseudomonas aeruginosa

ATCC 15692

OprI, OprF

P11221 P13794

[23–25]

Yersinia pestis

CO-92

Caf1, LcrV, YscF

P26948 P21206 Q7ARI0

[26,27]

Streptococcus agalactiae V

2603 V/R

Sip, GBS67, GBS80

Q8E2F6 Q8DYR5 Q8E0S9

[8]

Streptococcus agalactiae III

NEM316

Sip, GBS67, GBS80, C5a-ase

Q8E7W4 Q8E4C3 Q8E6E4 Q8E4T9

[8]

Streptococcus agalactiae Ia

A909

Sip, GBS67, GBS80, C5a-ase, C protein alpha-antigen, C protein beta-antigen

Q3K3Z5 Q3K246 Q3K250 Q3K0M1 Q02192 Q3K3P4

[8]

Neisseria meningitidis B

MC58

NspA, PorA, TbpA, TbpB, GNA33, GNA992, NadA, App, GNA1870

Q7DDM2 Q51240 Q9K0U9 Q9K0V0 Q7DDU3 Q7DDJ2 Q9JXK7 Q9JXL6 Q9JXV4

[12]

Porphyromonas gingivalis

W83

FimA, HagA, HagB, PG32, PG33

P59914 P59915 Q7MTI5 Q9S3R9 Q9S3R8

[29–32]

Borrelia burgdorferi

B31

OspA, OspC, BBI16

P14013 Q07337 O50870

[33–35]

Chlamydia trachomatis D

UW-3/Cx

MOMP, OMP3, OMP2

Q46409 P21355 P38006

[36]