Target | Amplicon: length, Tm | Oligonucleotide: Length, Tm | Sequence with dyes (for probes) |
---|---|---|---|
Endogenous control: Plastidic glutamine-synthetase | ampGSP1 86 bp, 79°C | Forward primer GSP20-24 24 bp, 54°C | 5'TGGAAACTTTAGGGTCCTTACTAC3' |
Reverse primer GSP21-22 22 bp, 56°C | 5'CAAGCCTTGTAGTGAGCATCTG3' | ||
Probe (binds to same strand as GSP21-22) 24 bp, 64°C | TET-5'ATGACTTATCCGCTCCAGCACCAC3'-TAMRA | ||
Transgene: Streptothricin-acetyl transferase | ampNAT1 86 bp, 81°C | Forward primer NAT8-18 18 bp, 57°C | 5'TTGTTGTGTCGCACACGC3' |
Reverse primer NAT9-20 20 bp, 56°C | 5'GAGCTGTCTGCTTAGTGCCC3' | ||
Probe (binds to same strand as NAT8-18) 23 bp, 64°C | FAM-5'AAGGAGTCGCGCACAGTCTCATC3'-TAMRA | ||
Transgene: NOS-terminator | AmpNOT2 76 bp, 74°C | Forward primer NOT5-24 24 bp, 59°C | 5'-TGGGTTTTTATGAT TAGAGTCCCG-3' |
Reverse primer NOT6-23 23 bp, 59°C | 5'-CCTAGTTTGCG CGCTATATTTTG-3' | ||
Probe (binds to same strand as NOT5-24) 20 bp, 69°C | FAM-5'-CATTTAATACGC GATAGAAA-3'-Q-MGB Q = dark quencher |